View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_33 (Length: 401)
Name: NF15735_low_33
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 13519028 - 13519145
Alignment:
| Q |
44 |
gattatatccatgtctttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttgttgttgatgatttat |
143 |
Q |
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| T |
13519028 |
gattatatccatgtgtttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttgttgttgatgatttat |
13519127 |
T |
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| Q |
144 |
gaggcttagtttgttaat |
161 |
Q |
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| T |
13519128 |
gaggcttagtttgttaat |
13519145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 13608561 - 13608678
Alignment:
| Q |
44 |
gattatatccatgtctttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttgttgttgatgatttat |
143 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608561 |
gattatatccatgtgtttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttgttgttgatgatttat |
13608660 |
T |
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| Q |
144 |
gaggcttagtttgttaat |
161 |
Q |
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| T |
13608661 |
gaggcttagtttgttaat |
13608678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 13519258 - 13519367
Alignment:
| Q |
280 |
tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggct |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519258 |
tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggct |
13519357 |
T |
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| Q |
380 |
atattcttgg |
389 |
Q |
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| T |
13519358 |
atattattgg |
13519367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 13608791 - 13608900
Alignment:
| Q |
280 |
tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggct |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608791 |
tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggct |
13608890 |
T |
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| Q |
380 |
atattcttgg |
389 |
Q |
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||||| |||| |
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| T |
13608891 |
atattattgg |
13608900 |
T |
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