View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_34 (Length: 391)
Name: NF15735_low_34
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 3 - 376
Target Start/End: Original strand, 45197974 - 45198347
Alignment:
| Q |
3 |
tggaggagcagagagaggcaatagaccgacaaacgtccacggtcctcctgaactctccttgcttttttctggcacttcctaaaaagtatgcataattcct |
102 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45197974 |
tggaggatcaaagagaggcaatagaccgacaaacgtccacggtcctcctgaactctccttgcttttttctggcacttcctaaaaagtatgcataattcct |
45198073 |
T |
|
| Q |
103 |
cataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagcaagggaacggagaccgcgtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198074 |
cataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaataaaagcttacttgtttgccaacagcaagggaacggagaccgcgtt |
45198173 |
T |
|
| Q |
203 |
cagcaaatttatcaataatggaaatagctttcctcttcacatcttctctaaggttgcacagatcaataatctaaaaggaaattcaaaaatttattgtcat |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45198174 |
cagcaaatttatcaataatggaaatagctttcctctttacatcttctctaaggttgcacagatcaataatctaaaaggaaattcaaaaatgtattgtcat |
45198273 |
T |
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| Q |
303 |
gtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgcccctttgcttact |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198274 |
gtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgcccctttgcttact |
45198347 |
T |
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Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 83 - 376
Target Start/End: Complemental strand, 30340921 - 30340628
Alignment:
| Q |
83 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
182 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30340921 |
aaaaaatatgcataattcctcataaaaatttattttgattcattcaatcataagtcatcattaataagaagtaagaaaagcttacttgtttaccaacagc |
30340822 |
T |
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| Q |
183 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatcttctctaaggttgcacagatcaataatctaaaaggaa |
282 |
Q |
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||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
30340821 |
aagggaagagagactgcgttcagcaaatttgtcaataatggaaatagctctccttctcacatcttctctaatgctgcacaattcaataatctaaaaggaa |
30340722 |
T |
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| Q |
283 |
attcaaaaatttattgtcatgtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgcccctttgcttact |
376 |
Q |
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| T |
30340721 |
attcaaaaaattattgtcatgtgaaacaatagatgccaaatatgactggtgaaaggtctatttgtttacctcctccggtgctcccttgcttact |
30340628 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 83 - 376
Target Start/End: Original strand, 18988851 - 18989144
Alignment:
| Q |
83 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
182 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
18988851 |
aaaaaatatgcataattcctcataaaaatttattttgattcattcaatccaaagtcatcattaataagaagtaagaaaagcttatttgtttaccaacagc |
18988950 |
T |
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| Q |
183 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatcttctctaaggttgcacagatcaataatctaaaaggaa |
282 |
Q |
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||||||| ||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
18988951 |
aagggaagagagactgtgttcagcaaatttatcaataatggaaatagctctccttctcacatcttctctaacgttgcacaaatcaataatctaaaaggaa |
18989050 |
T |
|
| Q |
283 |
attcaaaaatttattgtcatgtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgcccctttgcttact |
376 |
Q |
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||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||| || ||||||||| |
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| T |
18989051 |
attcaaaaacttattgtcatgtgaaacaatagatgccaaatatgaccggtgaaaggtctatttgtttacctcctccggtgctcccttgcttact |
18989144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 83 - 376
Target Start/End: Complemental strand, 23916671 - 23916379
Alignment:
| Q |
83 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
182 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
23916671 |
aaaaaatatgcataattcctcataaaat-ttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttatttgtttaccaacagc |
23916573 |
T |
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| Q |
183 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatcttctctaaggttgcacagatcaataatctaaaaggaa |
282 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
23916572 |
aagggaagagagactgcgttcagcaaatttatcaataatggaaatagctctccttctcacatcttctctaacgttgcacaaatcaataatctaaaaggaa |
23916473 |
T |
|
| Q |
283 |
attcaaaaatttattgtcatgtgaaacgatagatgtcaaatatgactggtgaaaggtctatttgtttacctgctccggtgcccctttgcttact |
376 |
Q |
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||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||| || ||||||||| |
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| T |
23916472 |
attcaaaaacttattgtcatgtgaaacaatagatgccaaatatgaccggtgaaaggtctatttgtttacctcctccggtgctcccttgcttact |
23916379 |
T |
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