View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_36 (Length: 375)
Name: NF15735_low_36
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 21122636 - 21122993
Alignment:
| Q |
1 |
cattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21122636 |
cattaggagcattcaaggacaaattgcagatatgttaaacttgaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaa |
21122735 |
T |
|
| Q |
101 |
gaaataaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattga |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21122736 |
gaaatgaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttatacaatgataatagaggtgcattga |
21122835 |
T |
|
| Q |
201 |
aaatccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggacatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21122836 |
aaatccttgtaaccacacgtattgagaatgtttgtattttaatgaattgtcacaagatgattcatttggggctcttgtccaaagatgaatcctggacatt |
21122935 |
T |
|
| Q |
301 |
cttccaaaagcttgcagtaattgatgacgaattctctgtgtcattagatggtgtacca |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21122936 |
cttccaaaagcttgcagtaattgatgacgaattctctgtgtcattagatggtgtacca |
21122993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 21115217 - 21115540
Alignment:
| Q |
9 |
gcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaa |
108 |
Q |
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||||||| ||| || ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||| ||| || |
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| T |
21115217 |
gcattcagggaaaacttgcagatatgttaaacttgaaattggaggaagaaagtgaagagggaagagcacaacgtttatggttgtgtttaaaacaaaagaa |
21115316 |
T |
|
| Q |
109 |
gagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagag-gtgcattgaaaatcct |
207 |
Q |
| |
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| ||| |||||||||||| ||| |||||||||||||||||||||||| ||| |||||||| | || |||||| ||| ||| ||| ||| |||| |
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| T |
21115317 |
gcgaattcttataatagtggacgatctatggagagagtttcatttgataaatatagggattctcgtagacaatgttaa-cgagcacacatggaaggtcct |
21115415 |
T |
|
| Q |
208 |
tgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggacattcttccaa |
307 |
Q |
| |
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||||||| |||| |||| |||| |||| | |||| | |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |
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| T |
21115416 |
gataaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaatcttggacattattccaa |
21115515 |
T |
|
| Q |
308 |
aagcttgcagtaattgatgacgaat |
332 |
Q |
| |
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||| ||||| |||||||||||||| |
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| T |
21115516 |
aagtttgcaagaattgatgacgaat |
21115540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 21715745 - 21715439
Alignment:
| Q |
10 |
cattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaag |
109 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||| ||| | ||||||||| ||||| |||||||||||||| | |||||| |||| ||||||| || |
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| T |
21715745 |
cattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtggttgagtttgaaagaaaataaa |
21715646 |
T |
|
| Q |
110 |
agaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttg |
209 |
Q |
| |
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||| |||| | ||| |||| || |||||| ||||||| |||||| | ||| |||||||| | || |||||| ||| | || |||| ||||||||||| |
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| T |
21715645 |
cgaattcttgttataattgatgatttatggaaagagtttaatttgatgaatatagggattcacatagacaatgttaacaagggcgcatggaaaatccttg |
21715546 |
T |
|
| Q |
210 |
taaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggacattcttccaaaa |
309 |
Q |
| |
|
||||||| |||| | || | || || | ||||||| | ||||||||||| ||||| ||| |||||| || ||||||||||||||||| || |||||||| |
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| T |
21715545 |
taaccactcgtaatcagcaagtatgcactttaatggactgtcaaaagaatattcacctggcgctcttatctaaagatgaatcctggactttgttccaaaa |
21715446 |
T |
|
| Q |
310 |
gcttgca |
316 |
Q |
| |
|
|| |||| |
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|
| T |
21715445 |
gcatgca |
21715439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 21622463 - 21622576
Alignment:
| Q |
203 |
atccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggacattct |
302 |
Q |
| |
|
|||||||||||||| |||| | || | || || | || |||| | ||||||||||| |||||| | | ||| || || ||||||||||||||||| || | |
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| T |
21622463 |
atccttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctggactttgt |
21622562 |
T |
|
| Q |
303 |
tccaaaagcttgca |
316 |
Q |
| |
|
||||||||| |||| |
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|
| T |
21622563 |
tccaaaagcatgca |
21622576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 21644177 - 21644290
Alignment:
| Q |
203 |
atccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggacattct |
302 |
Q |
| |
|
|||||||||||||| |||| | || | || || | || |||| | ||||||||||| |||||| | | ||| || || ||||||||||||||||| || | |
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| T |
21644177 |
atccttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctggactttgt |
21644276 |
T |
|
| Q |
303 |
tccaaaagcttgca |
316 |
Q |
| |
|
||||||||| |||| |
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|
| T |
21644277 |
tccaaaagcatgca |
21644290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 23010646 - 23010392
Alignment:
| Q |
11 |
attcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaaga |
110 |
Q |
| |
|
||||||||| |||| || ||| | || ||| | ||||||| |||||||||||| || ||||||||||||||| | |||||| |||| ||||||| ||| |
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| T |
23010646 |
attcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttgagtttgaaagaaaagaagc |
23010547 |
T |
|
| Q |
111 |
gaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttgt |
210 |
Q |
| |
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| | ||| ||||||| || || |||||||||||||| ||||||| ||| ||||||||||||| |||||||||| | ||||||| ||| ||||||| |
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| T |
23010546 |
ggattctcgtaatagtagatgatttatggagagagtttgatttgaacgatgtagggattcgcttagacaatgataacaagggtgcatggaagatccttgc |
23010447 |
T |
|
| Q |
211 |
aaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcat |
265 |
Q |
| |
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|||||| |||| | | |||| ||| || | ||| | |||||||||||||||||| |
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|
| T |
23010446 |
aaccactcgtaatcaacatgtatgtgatctgatgcactgtcaaaagaagattcat |
23010392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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