View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_low_37 (Length: 372)
Name: NF15735_low_37
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 16906185 - 16906542
Alignment:
| Q |
1 |
aacaatgtcacttgttaatgtaacttgtttagctagacaaatgcacaagacaaaattgaatctagtatacgtgtctaatgaagaggagaagagtgtgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16906185 |
aacaatgtcacttgttaatgtaacttgtttagctagacaaatgcacaagacaaaattgaatctagtatacgtgtctaatgaagaggagaagagtgtgtga |
16906284 |
T |
|
| Q |
101 |
ggaaaatcgaattatattatatggatgttgatgcaaagcaaggtagctatatactagctatcaagataggctttgtttttcacatgcaatgtgtatgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16906285 |
ggaaaatcgaattatattatatggatgttgatgcaaagcaaggtagctatatactagctatcaagataggctttgtttttcacatgcaatgtgtatgatt |
16906384 |
T |
|
| Q |
201 |
ggctagcttctcttctttatcaacataaggttcaaagcaaagttgttggagaaaaattgatatgatatgtgaccacatttttctttatctttaatctctg |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16906385 |
ggctagcttgtcttctttatcaacataaggttcaaagcaaacttgttggagaaaaattgatatgatatgtgaccacatttttctttatctttaatctctg |
16906484 |
T |
|
| Q |
301 |
agctttacttagttaatcaaaatcttaagttattcttgttgataatttatgtacatat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16906485 |
agctttacttagttaatcaaaatcttaagttattcttgttgataatttatgtacatat |
16906542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University