View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_38 (Length: 370)
Name: NF15735_low_38
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 31607719 - 31608062
Alignment:
| Q |
12 |
gaagagcttgaggttggtgatgatgctgctcatggggaagaagcttatgtattatggggtgatggagaaagaatgaggctccctcttcgtcgagatataa |
111 |
Q |
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| T |
31607719 |
gaagaccttgaggttggtgatgatgctgctcatggggaagaagcttatgtattatggggtgatggagaaagaatgcggctccctcttcgtcgagatataa |
31607818 |
T |
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| Q |
112 |
gtccaataattccttacatttctcaccaaagacattcaattcctatcaataaaattgatgagtaatctatgttaatattgaagtttcgagtgtgaatgtg |
211 |
Q |
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| T |
31607819 |
gtccaataattccttacatttctcaccaaagacattcatttcctatcaataaaattgatgagtaatctatgttaatattgaagtttcgagtgtgaatgtg |
31607918 |
T |
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| Q |
212 |
tgagttgagtaacatatatgcgaaagatggttcgtcaatccaatttttaagattttggatcaagaagtgctgttcaaaccacttgtatatag----ctgg |
307 |
Q |
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| T |
31607919 |
tgagttgagtaacatatatgcgaaagatggttcgtcaatccaatttttaagattttggatcaagaagtggtgttcaaaccacttgtatatagttgtttgg |
31608018 |
T |
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| Q |
308 |
ataccactctgataccaccgttgtattctcgtatcatctatgat |
351 |
Q |
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| T |
31608019 |
ataccactctgataccaccgttgtattctcgtatcatctatgat |
31608062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 39724577 - 39724523
Alignment:
| Q |
25 |
ttggtgatgatgctgctcatggggaagaagcttatgtattatggggtgatggaga |
79 |
Q |
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| T |
39724577 |
ttggggatgatgcagttcatggggaagaagcttatgctttatggggtgatggaga |
39724523 |
T |
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