View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_low_40 (Length: 361)
Name: NF15735_low_40
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_40 |
 | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 19548448 - 19548653
Alignment:
| Q |
3 |
atatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgacaag |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19548448 |
atatgtaacaccagggtt-ggcgttgacgatgaacttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttaaatgacaag |
19548546 |
T |
|
| Q |
103 |
aaaattttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttttg |
202 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19548547 |
agaaatttttattaatgatatcagagaattgttttttgctgttgaaattattatttaaaaggaaaatttaaactacaatgtgatatcatgtgaagttttg |
19548646 |
T |
|
| Q |
203 |
taacatc |
209 |
Q |
| |
|
||||||| |
|
|
| T |
19548647 |
taacatc |
19548653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 9190121 - 9189916
Alignment:
| Q |
1 |
tgatatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgaca |
100 |
Q |
| |
|
||||||||||||| |||||| | ||||||| |||||||||||||||| ||| || ||||||||||||||| ||||||| |||| ||||||| ||||||| |
|
|
| T |
9190121 |
tgatatgtaacactagggtt-gaagttgacgttgaatttatttatcttggagattgaatcttgagaactattgttatttctattacgatgttaaatgaca |
9190023 |
T |
|
| Q |
101 |
agaaaattttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttt |
200 |
Q |
| |
|
||| || |||||||||||| || |||| ||||||| | ||| ||||||||| ||||||||||| |||| |||| ||||||| |||||||||| || |
|
|
| T |
9190022 |
agagaaacttttattaatgagattagaggattgttt--taacgtttaaattattacttaaaaggaaactttaggctattatgtgatgtcatgtgaagatt |
9189925 |
T |
|
| Q |
201 |
tgtaacatc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
9189924 |
tgtaacatc |
9189916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 18558021 - 18558229
Alignment:
| Q |
1 |
tgatatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgaca |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18558021 |
tgatatgtaacaccagggtt-gacgttgaggatgaatatatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttaaatgaca |
18558119 |
T |
|
| Q |
101 |
agaaaattttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttt |
200 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18558120 |
agagaaatttttattaatgatatcagagaattgttttctgctattgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttt |
18558219 |
T |
|
| Q |
201 |
tgtaacatcc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
18558220 |
tgtaacatcc |
18558229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 20874567 - 20874750
Alignment:
| Q |
27 |
tgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgacaagaaaattttttattaatgatatcag |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||| ||| ||||||| || |||||||||||| ||||| |
|
|
| T |
20874567 |
tgacgttgaatttatttatctttgagtttaaatattgagagctattgttatttctatttcgatgtcgaacgacaagagaaagttttattaatgagatcag |
20874666 |
T |
|
| Q |
127 |
agaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttttgtaacatcc |
210 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20874667 |
aggattgttttctgctgttgaaattattatttacaaggaaaatttatgctaatatgtgatatcatgtgaagttttgtaacatcc |
20874750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 8807557 - 8807352
Alignment:
| Q |
1 |
tgatatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgaca |
100 |
Q |
| |
|
||||||| ||||| |||||| || ||||| | ||||||||||||||||| ||||||||||||||| |||| |||||| ||| || ||| ||||||||| |
|
|
| T |
8807557 |
tgatatgcaacactagggttggg-gttgatgttgaatttatttatctttaagtttaaatcttgag-actactattatttctatctcaatgctgaatgaca |
8807460 |
T |
|
| Q |
101 |
agaaaattttttattaatgatatcagagaattgt-tttctgttgttgaaattattattt--aaaaggaaaatttaaactataatgtgatatcatgtgaag |
197 |
Q |
| |
|
||| || |||||||||||| ||||||||||||| ||| ||||||| ||||||||||| |||| ||||| ||| | | ||||||||||| ||||| |
|
|
| T |
8807459 |
agagaaaattttattaatgagatcagagaattgtcattccgttgttggaattattattttaaaaaagaaaacttatgttgttatgtgatatcacgtgaaa |
8807360 |
T |
|
| Q |
198 |
ttttgtaa |
205 |
Q |
| |
|
|||||||| |
|
|
| T |
8807359 |
ttttgtaa |
8807352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 5810 - 6017
Alignment:
| Q |
1 |
tgatatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgaca |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5810 |
tgatatgtaacaccagggttggg-gttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgata |
5908 |
T |
|
| Q |
101 |
agaaaattttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttt |
200 |
Q |
| |
|
||| || |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5909 |
agagaaatttt-attaatgatatctgagaattgttttctgctgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttt |
6007 |
T |
|
| Q |
201 |
tgtaacatcc |
210 |
Q |
| |
|
| |||||||| |
|
|
| T |
6008 |
tataacatcc |
6017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 27871638 - 27871846
Alignment:
| Q |
1 |
tgatatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgaca |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| | |
|
|
| T |
27871638 |
tgatatgtaacaccagggttggg-gttgacgatgaatttatttatctttaagtttaaatcttgagaacaatagttatttctatttcgatgttgaatgata |
27871736 |
T |
|
| Q |
101 |
agaaaattttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttt |
200 |
Q |
| |
|
||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
27871737 |
agagaaatttttattaatgagattagagaattgttttctgttgttgaaattattatttaaaagaaaaatttatgctattatgtgatatcatgtgaagttt |
27871836 |
T |
|
| Q |
201 |
tgtaacatcc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
27871837 |
tgtaacatcc |
27871846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 18988513 - 18988715
Alignment:
| Q |
1 |
tgatatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgaca |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18988513 |
tgatatgtaacaccagggttggg-gttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttttatttcgatgttgaatgaca |
18988611 |
T |
|
| Q |
101 |
agaaaattttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttt |
200 |
Q |
| |
|
|| || ||||||||||||| || ||| ||||||||| |||||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18988612 |
agtgaaatttttattaatgagattagaaaattgttttatgttgttgaaattattattt-aaagaaaaatttatgctattatgtgatatcatgtgaagttt |
18988710 |
T |
|
| Q |
201 |
tgtaa |
205 |
Q |
| |
|
||||| |
|
|
| T |
18988711 |
tgtaa |
18988715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 12132684 - 12132558
Alignment:
| Q |
81 |
tatttcgatgttgaatgacaagaaaattttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataa |
180 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
12132684 |
tatttcgatgtcgaacgacaagagaattttttattaatgagatcagaggattgttttccgctgttgaaattattatttaaaaggaaaatttatgctaata |
12132585 |
T |
|
| Q |
181 |
tgtgatat-catgtgaagttttgtaac |
206 |
Q |
| |
|
| |||||| |||||||||||| ||||| |
|
|
| T |
12132584 |
tttgatatgcatgtgaagtttcgtaac |
12132558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 16858055 - 16857923
Alignment:
| Q |
1 |
tgatatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgaca |
100 |
Q |
| |
|
||||||||||||||| |||| || || || | || |||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
16858055 |
tgatatgtaacaccatggttggg-gtcgatgttggatttatttatctttaagttcaaatcttgagaactatagttatttctatctcgatgttgaatgaca |
16857957 |
T |
|
| Q |
101 |
agaaaattttttattaatgatatcagagaattgt |
134 |
Q |
| |
|
||| || ||||| |||||| ||||||| ||||| |
|
|
| T |
16857956 |
agagaaaattttaataatgagatcagaggattgt |
16857923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 24562451 - 24562248
Alignment:
| Q |
6 |
tgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgacaagaaa |
105 |
Q |
| |
|
|||||||| |||||| || ||||||| |||||||||||||| || ||||||||||||||||||| | ||||||| ||||| ||||| ||| ||||||| | |
|
|
| T |
24562451 |
tgtaacactagggtt-ggagttgacgttgaatttatttatcgttaagtttaaatcttgagaactgttgttatttttattttgatgtcgaacgacaagaga |
24562353 |
T |
|
| Q |
106 |
attttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttttgtaa |
205 |
Q |
| |
|
| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
24562352 |
aatttttattaatgagatcagatgattgttttccattgttgaaattattatttaaaaggaaaatttatgctaatatgtgaaatcatgtgaagttttgtaa |
24562253 |
T |
|
| Q |
206 |
catcc |
210 |
Q |
| |
|
||||| |
|
|
| T |
24562252 |
catcc |
24562248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 24603485 - 24603282
Alignment:
| Q |
6 |
tgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgacaagaaa |
105 |
Q |
| |
|
|||||||| |||||| || ||||||| |||||||||||||| || ||||||||||||||||||| | ||||||| ||||| ||||| ||| ||||||| | |
|
|
| T |
24603485 |
tgtaacactagggtt-ggagttgacgttgaatttatttatcgttaagtttaaatcttgagaactgttgttatttttattttgatgtcgaacgacaagaga |
24603387 |
T |
|
| Q |
106 |
attttttattaatgatatcagagaattgttttctgttgttgaaattattatttaaaaggaaaatttaaactataatgtgatatcatgtgaagttttgtaa |
205 |
Q |
| |
|
| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
24603386 |
aatttttattaatgagatcagatgattgttttccattgttgaaattattatttaaaaggaaaatttatgctaatatgtgaaatcatgtgaagttttgtaa |
24603287 |
T |
|
| Q |
206 |
catcc |
210 |
Q |
| |
|
||||| |
|
|
| T |
24603286 |
catcc |
24603282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 6056589 - 6056477
Alignment:
| Q |
33 |
tgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgacaagaaaattttttattaatgatatcagagaatt |
132 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
6056589 |
tgaatctatttattgttgagtgtaaatcttgagaattattgttatttctatttcgatgttgaataacaagaaaaaaaattattaatgaaatcagggaatt |
6056490 |
T |
|
| Q |
133 |
gttttctgttgtt |
145 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
6056489 |
gttttccgttgtt |
6056477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 15214 - 15356
Alignment:
| Q |
1 |
tgatatgtaacaccagggttaggcgttgacgatgaatttatttatctttgagtttaaatcttgagaactatagttatttatatttcgatgttgaatgaca |
100 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
15214 |
tgatatgtaacaccagggttggg-gtttacgatgaatttatttatctttgagtttaaatcttgagaactataattatttttatttcgatgttgaatgaca |
15312 |
T |
|
| Q |
101 |
agaaaattttttattaatgatatcagagaattgttttctgttgt |
144 |
Q |
| |
|
||| || ||||||||||||| || | | |||||||||||||||| |
|
|
| T |
15313 |
agagaaatttttattaatgagattacataattgttttctgttgt |
15356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 17603106 - 17603156
Alignment:
| Q |
292 |
ggatttgcaacaatttggatgggacatgtactgttagcataaagtgaggtt |
342 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
17603106 |
ggatttgcaacaatttggatggcacttgtattgttagcataaagtgaggtt |
17603156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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