View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_low_47 (Length: 328)

Name: NF15735_low_47
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_low_47
NF15735_low_47
[»] chr8 (13 HSPs)
chr8 (48-153)||(23766568-23766673)
chr8 (146-179)||(4214880-4214913)
chr8 (155-187)||(29773443-29773475)
chr8 (156-187)||(27970011-27970042)
chr8 (148-187)||(28090183-28090222)
chr8 (157-187)||(34047793-34047823)
chr8 (154-187)||(14498679-14498712)
chr8 (155-187)||(12633282-12633314)
chr8 (155-187)||(12801105-12801137)
chr8 (155-187)||(17096657-17096689)
chr8 (147-175)||(38765101-38765129)
chr8 (151-187)||(43331738-43331774)
chr8 (159-187)||(44934901-44934929)
[»] scaffold0340 (1 HSPs)
scaffold0340 (50-156)||(11958-12066)
[»] chr3 (8 HSPs)
chr3 (153-187)||(42067575-42067609)
chr3 (155-187)||(29786973-29787005)
chr3 (153-187)||(11140243-11140277)
chr3 (153-187)||(31308873-31308907)
chr3 (148-185)||(44365612-44365649)
chr3 (155-187)||(15804256-15804288)
chr3 (155-187)||(35171569-35171601)
chr3 (155-187)||(39630267-39630299)
[»] chr7 (4 HSPs)
chr7 (155-187)||(1343017-1343049)
chr7 (148-179)||(45197189-45197220)
chr7 (157-187)||(3909928-3909958)
chr7 (153-185)||(30862785-30862817)
[»] chr6 (6 HSPs)
chr6 (152-187)||(26358929-26358964)
chr6 (157-187)||(6848510-6848540)
chr6 (157-187)||(7344692-7344722)
chr6 (159-187)||(2258905-2258933)
chr6 (147-179)||(6016189-6016221)
chr6 (159-187)||(17545607-17545635)
[»] chr5 (5 HSPs)
chr5 (148-187)||(43237729-43237768)
chr5 (155-185)||(6532577-6532607)
chr5 (158-187)||(19189107-19189136)
chr5 (155-187)||(19238792-19238824)
chr5 (159-187)||(21605650-21605678)
[»] chr2 (4 HSPs)
chr2 (152-187)||(11813573-11813608)
chr2 (153-187)||(4673978-4674012)
chr2 (151-185)||(14533200-14533234)
chr2 (159-187)||(6884161-6884189)
[»] chr1 (9 HSPs)
chr1 (156-187)||(34256452-34256483)
chr1 (156-187)||(35305150-35305181)
chr1 (157-187)||(922218-922248)
chr1 (157-187)||(27295058-27295088)
chr1 (153-187)||(31931074-31931108)
chr1 (157-187)||(44978869-44978899)
chr1 (149-179)||(49685977-49686007)
chr1 (155-187)||(35913008-35913040)
chr1 (155-187)||(41073268-41073300)
[»] scaffold0005 (1 HSPs)
scaffold0005 (153-187)||(36985-37019)
[»] chr4 (4 HSPs)
chr4 (153-187)||(14802708-14802742)
chr4 (157-187)||(51436190-51436220)
chr4 (150-179)||(45629101-45629130)
chr4 (151-187)||(48207072-48207108)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 23766673 - 23766568
Alignment:
Q  48 gaagggagagcaaaaatattcttcaatgaatatattttttattattttacatgattgtttaaatggaagagttaaattggtcattatgagtgtgtaggta 147  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23766673 gaagagagagcaaaaatattcttcaatgaatatattttttattatattacatgattgtttaaatggaaaagttaaattggtcattatgagtgtgtaggta 23766574  T
Q  148 ttatta 153  Q
    ||||||    
T  23766573 ttatta 23766568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 4214913 - 4214880
Alignment:
Q  146 tattattattaggcaaattctatggtacacccaa 179  Q
    ||||||||||||||||||||||||||||||||||    
T  4214913 tattattattaggcaaattctatggtacacccaa 4214880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 29773443 - 29773475
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||||    
T  29773443 taggcaaattctatggtacacccaacaatttga 29773475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 27970011 - 27970042
Alignment:
Q  156 aggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||||||||    
T  27970011 aggcaaattctatggtacacccaacaatttga 27970042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 28090183 - 28090222
Alignment:
Q  148 ttattattaggcaaattctatggtacacccaacaatttga 187  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  28090183 ttattatttggcaaattctatggtacacccaataatttga 28090222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 34047823 - 34047793
Alignment:
Q  157 ggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||    
T  34047823 ggcaaattctatggtacacccaacaatttga 34047793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 14498712 - 14498679
Alignment:
Q  154 ttaggcaaattctatggtacacccaacaatttga 187  Q
    |||||||| |||||||||||||||||||||||||    
T  14498712 ttaggcaagttctatggtacacccaacaatttga 14498679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 12633314 - 12633282
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||| |||||    
T  12633314 taggcaaattctatggtacacccaacattttga 12633282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 12801105 - 12801137
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||| |||||||    
T  12801105 taggcaaattctatggtacacccaaaaatttga 12801137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 17096689 - 17096657
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||| |||||    
T  17096689 taggcaaattctatggtacacccaacattttga 17096657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 38765129 - 38765101
Alignment:
Q  147 attattattaggcaaattctatggtacac 175  Q
    |||||||||||||||||||||||||||||    
T  38765129 attattattaggcaaattctatggtacac 38765101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 43331738 - 43331774
Alignment:
Q  151 ttattaggcaaattctatggtacacccaacaatttga 187  Q
    |||| |||||||||||||||||||||||||| |||||    
T  43331738 ttataaggcaaattctatggtacacccaacattttga 43331774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 44934901 - 44934929
Alignment:
Q  159 caaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||    
T  44934901 caaattctatggtacacccaacaatttga 44934929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 11958 - 12066
Alignment:
Q  50 agggagagcaaaaatattcttcaatgaatat--attttttattattttacatgattgtttaaatggaagagttaaattggtcattatgagtgtgtaggta 147  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  11958 agggagagcaaaaatattcttcaatgaatatatattttttattattttacatgattgtttatctggaagagttaaattggtcattatgagtgtgtaggta 12057  T
Q  148 ttattatta 156  Q
    |||||||||    
T  12058 ttattatta 12066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 42067575 - 42067609
Alignment:
Q  153 attaggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||||||    
T  42067575 attaggcaaattctatggtacacccaacaatttga 42067609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 29787005 - 29786973
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||||    
T  29787005 taggcaaattctatggtacacccaacaatttga 29786973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 11140243 - 11140277
Alignment:
Q  153 attaggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||| |||||||    
T  11140243 attaggcaaattctatggtacacccaataatttga 11140277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 31308873 - 31308907
Alignment:
Q  153 attaggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||| ||||||||||    
T  31308873 attaggcaaattctatggtacacctaacaatttga 31308907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 44365612 - 44365649
Alignment:
Q  148 ttattattaggcaaattctatggtacacccaacaattt 185  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  44365612 ttataattaggcaaattctatgatacacccaacaattt 44365649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 15804256 - 15804288
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||| |||||    
T  15804256 taggcaaattctatggtacacccaacattttga 15804288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 35171601 - 35171569
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    ||||||| |||||||||||||||||||||||||    
T  35171601 taggcaagttctatggtacacccaacaatttga 35171569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 39630299 - 39630267
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||| ||||||||||||    
T  39630299 taggcaaattctatggtacatccaacaatttga 39630267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 1343017 - 1343049
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||||    
T  1343017 taggcaaattctatggtacacccaacaatttga 1343049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 179
Target Start/End: Complemental strand, 45197220 - 45197189
Alignment:
Q  148 ttattattaggcaaattctatggtacacccaa 179  Q
    ||||||||||||||||||||||||||||||||    
T  45197220 ttattattaggcaaattctatggtacacccaa 45197189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 3909928 - 3909958
Alignment:
Q  157 ggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||    
T  3909928 ggcaaattctatggtacacccaacaatttga 3909958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 30862785 - 30862817
Alignment:
Q  153 attaggcaaattctatggtacacccaacaattt 185  Q
    ||||||||| |||||||||||||||||||||||    
T  30862785 attaggcaagttctatggtacacccaacaattt 30862817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 26358964 - 26358929
Alignment:
Q  152 tattaggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||| |||||||||||||||||||||||||    
T  26358964 tattaggcaagttctatggtacacccaacaatttga 26358929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 6848510 - 6848540
Alignment:
Q  157 ggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||    
T  6848510 ggcaaattctatggtacacccaacaatttga 6848540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 7344722 - 7344692
Alignment:
Q  157 ggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||    
T  7344722 ggcaaattctatggtacacccaacaatttga 7344692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 2258905 - 2258933
Alignment:
Q  159 caaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||    
T  2258905 caaattctatggtacacccaacaatttga 2258933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 6016221 - 6016189
Alignment:
Q  147 attattattaggcaaattctatggtacacccaa 179  Q
    |||||| ||||||||||||||||||||||||||    
T  6016221 attatttttaggcaaattctatggtacacccaa 6016189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 17545607 - 17545635
Alignment:
Q  159 caaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||    
T  17545607 caaattctatggtacacccaacaatttga 17545635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 43237768 - 43237729
Alignment:
Q  148 ttattattaggcaaattctatggtacacccaacaatttga 187  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  43237768 ttattatttggcaaattctatggtacacccaataatttga 43237729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 185
Target Start/End: Original strand, 6532577 - 6532607
Alignment:
Q  155 taggcaaattctatggtacacccaacaattt 185  Q
    |||||||||||||||||||||||||||||||    
T  6532577 taggcaaattctatggtacacccaacaattt 6532607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 19189107 - 19189136
Alignment:
Q  158 gcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||||||    
T  19189107 gcaaattctatggtacacccaacaatttga 19189136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 19238792 - 19238824
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||| |||||    
T  19238792 taggcaaattctatggtacacccaacattttga 19238824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 21605650 - 21605678
Alignment:
Q  159 caaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||    
T  21605650 caaattctatggtacacccaacaatttga 21605678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 11813608 - 11813573
Alignment:
Q  152 tattaggcaaattctatggtacacccaacaatttga 187  Q
    ||||||| ||||||||||||||||||||||||||||    
T  11813608 tattaggaaaattctatggtacacccaacaatttga 11813573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 4674012 - 4673978
Alignment:
Q  153 attaggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||| ||||||||||||    
T  4674012 attaggcaaattctatggtacatccaacaatttga 4673978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 14533234 - 14533200
Alignment:
Q  151 ttattaggcaaattctatggtacacccaacaattt 185  Q
    |||| ||||||||||||||||||||||||||||||    
T  14533234 ttatgaggcaaattctatggtacacccaacaattt 14533200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 6884161 - 6884189
Alignment:
Q  159 caaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||    
T  6884161 caaattctatggtacacccaacaatttga 6884189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 34256452 - 34256483
Alignment:
Q  156 aggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||||||||    
T  34256452 aggcaaattctatggtacacccaacaatttga 34256483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 35305150 - 35305181
Alignment:
Q  156 aggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||||||||    
T  35305150 aggcaaattctatggtacacccaacaatttga 35305181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 922248 - 922218
Alignment:
Q  157 ggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||    
T  922248 ggcaaattctatggtacacccaacaatttga 922218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 27295058 - 27295088
Alignment:
Q  157 ggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||    
T  27295058 ggcaaattctatggtacacccaacaatttga 27295088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 31931108 - 31931074
Alignment:
Q  153 attaggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||| ||||||||||||    
T  31931108 attaggcaaattctatggtacatccaacaatttga 31931074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 44978869 - 44978899
Alignment:
Q  157 ggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||    
T  44978869 ggcaaattctatggtacacccaacaatttga 44978899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 49685977 - 49686007
Alignment:
Q  149 tattattaggcaaattctatggtacacccaa 179  Q
    |||||||||||||||||||||||||||||||    
T  49685977 tattattaggcaaattctatggtacacccaa 49686007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 35913040 - 35913008
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||||||| |||||    
T  35913040 taggcaaattctatggtacacccaacattttga 35913008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 41073268 - 41073300
Alignment:
Q  155 taggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||| ||||||    
T  41073268 taggcaaattctatggtacacccaaccatttga 41073300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 37019 - 36985
Alignment:
Q  153 attaggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||| |||||||||||    
T  37019 attaggcaaattctatggtacactcaacaatttga 36985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 14802708 - 14802742
Alignment:
Q  153 attaggcaaattctatggtacacccaacaatttga 187  Q
    ||||||||||||||||||||||| |||||||||||    
T  14802708 attaggcaaattctatggtacactcaacaatttga 14802742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 51436220 - 51436190
Alignment:
Q  157 ggcaaattctatggtacacccaacaatttga 187  Q
    |||||||||||||||||||||||||||||||    
T  51436220 ggcaaattctatggtacacccaacaatttga 51436190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 179
Target Start/End: Original strand, 45629101 - 45629130
Alignment:
Q  150 attattaggcaaattctatggtacacccaa 179  Q
    ||||||||||||||||||||||||||||||    
T  45629101 attattaggcaaattctatggtacacccaa 45629130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 48207072 - 48207108
Alignment:
Q  151 ttattaggcaaattctatggtacacccaacaatttga 187  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  48207072 ttatttggcaaattctatggtacacccaacattttga 48207108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University