View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_48 (Length: 323)
Name: NF15735_low_48
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 35696607 - 35696302
Alignment:
| Q |
8 |
tgagatgaacagcgacagttccaatgagaacatcacggagccaagcagaggcatagatttcaatcataatgacagactcttctgataggaggaaatcatc |
107 |
Q |
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| T |
35696607 |
tgagatgaacagcgacagttccaatgagaacatcacggagccaagcagaggcatagatttcaatcataatgacagactcttctgataggaggaaatcatc |
35696508 |
T |
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| Q |
108 |
gtcgacgcggaaaacaaatttttcattccaggtagggttgttatgaccatgagggtctgcttgggtggtaagtttacgttctggattgagccatgcaact |
207 |
Q |
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| T |
35696507 |
gtcgacgcggaaaacaaatttttcattccaggtagggttgttatgaccatgagggtctgcttgggtggtaagtttacgttctggattgagccatgcaact |
35696408 |
T |
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| Q |
208 |
gcataggctttgattgatttagaaacgggtgcgaggtcttgtgctgatatgacgttgatttctaggagttggaagggaggtgctagcatcgacattgttg |
307 |
Q |
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| T |
35696407 |
gcataggctttgattgatttagaaacgggtgcgaggtcttgtgctgatatgacgttgatttctaggagttggaagggaggtgctagcatcgacattgttg |
35696308 |
T |
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| Q |
308 |
tgatga |
313 |
Q |
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| T |
35696307 |
tgatga |
35696302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 47725460 - 47725572
Alignment:
| Q |
25 |
gttccaatgagaacatcacggagccaagcagaggcatagatttcaatcataatgacagactcttctgataggaggaaatcatcgtcgacgcggaaaacaa |
124 |
Q |
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| T |
47725460 |
gttccaatgagaatatcacggagccaagcagaattgtagatttcaatcatgataacagaactttctgaattgagaaattcattatcgacgcggaaaacaa |
47725559 |
T |
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| Q |
125 |
atttttcattcca |
137 |
Q |
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| T |
47725560 |
atttctcattcca |
47725572 |
T |
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