View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_low_49 (Length: 323)
Name: NF15735_low_49
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_49 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 26119930 - 26120253
Alignment:
| Q |
1 |
tgaaagagttcctcgttgaaaacgacttggtcccatgccttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26119930 |
tgaaagagttcctcgttgaaaacgacttggtcccatgctttctccttcaaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtc |
26120029 |
T |
|
| Q |
101 |
tgatatagaagaaaccagcattgtaaacaaatatcctcctggtaaaaacgccactagaccaacccat-ccagggtcgtcgaagacatcgttatagccgta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| || |
|
|
| T |
26120030 |
tgatatagaagaaaccagcattgtaaacaaatatcctcctggtaaaaacgccactagaccaacccatcccagggtcgttgaagacatcgttgtagccata |
26120129 |
T |
|
| Q |
200 |
agctgtcatgttattatgaccgtcgctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgat |
299 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26120130 |
agctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatatcgatgtctgat |
26120229 |
T |
|
| Q |
300 |
agaagaacactgtatcccaactgc |
323 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26120230 |
agaagaacactgtatcccaactgc |
26120253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 3 - 323
Target Start/End: Original strand, 26096645 - 26096966
Alignment:
| Q |
3 |
aaagagttcctcgttgaaaacgacttggtcccatgccttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtctg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26096645 |
aaagagttcctcgttgaaaacgacttggtcccatgctttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtctg |
26096744 |
T |
|
| Q |
103 |
atatagaagaaaccagcattgtaaacaaatatcctcctggtaaaaacgccactagaccaacccat-ccagggtcgtcgaagacatcgttatagccgtaag |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| || || |||| |
|
|
| T |
26096745 |
atatagaagaaaccacaattgtaaacaaatatcctcctggtataaacaccactagaccaacccatcccagggtcgtcgaagacatcgttgtaaccataag |
26096844 |
T |
|
| Q |
202 |
ctgtcatgttattatgaccgtcgctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgatag |
301 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26096845 |
ctgtcatgttatcatgaccatcactcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgaaag |
26096944 |
T |
|
| Q |
302 |
aagaacactgtatcccaactgc |
323 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
26096945 |
aagaacactatatcccaactgc |
26096966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 26084368 - 26084691
Alignment:
| Q |
1 |
tgaaagagttcctcgttgaaaacgacttggtcccatgccttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084368 |
tgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtc |
26084467 |
T |
|
| Q |
101 |
tgatatagaagaaaccagcattgtaaacaaatatcctcctggtaaaaacgccactagaccaacccat-ccagggtcgtcgaagacatcgttatagccgta |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||| ||||| | ||||||||||||| ||| |||| | |||||||||||| ||||| || |
|
|
| T |
26084468 |
tgatatagaagaaaccagaattgtaaacaaatatcctcgtggtataaacgttagtagaccaacccatcccatggtctttgaagacatcgttgtagccata |
26084567 |
T |
|
| Q |
200 |
agctgtcatgttattatgaccgtcgctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgat |
299 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084568 |
agctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatatacaatgtcgatgtctgat |
26084667 |
T |
|
| Q |
300 |
agaagaacactgtatcccaactgc |
323 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
26084668 |
agaagaacactatatcccaactgc |
26084691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 323
Target Start/End: Original strand, 26126589 - 26126910
Alignment:
| Q |
3 |
aaagagttcctcgttgaaaacgacttggtcccatgccttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtctg |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26126589 |
aaagagttcctcgttgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttggtctg |
26126688 |
T |
|
| Q |
103 |
atatagaagaaaccagcattgtaaacaaatatcctcctggtaaaaacgccactagaccaacccatcc-agggtcgtcgaagacatcgttatagccgtaag |
201 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| | ||| |||| || ||||||||||||| ||| ||||| |||||||||||| |||| |||| |
|
|
| T |
26126689 |
atatagaagaaaccagaattgtaaacccatatcctagttgtatgaacgatacgagaccaacccatcagaggttcgtcaaagacatcgttaaagccataag |
26126788 |
T |
|
| Q |
202 |
ctgtcatgttattatgaccgtcgctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgatag |
301 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26126789 |
ctgtcatgttatcatgaccatcgctcatggactctacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgatag |
26126888 |
T |
|
| Q |
302 |
aagaacactgtatcccaactgc |
323 |
Q |
| |
|
|||||| || |||||||||||| |
|
|
| T |
26126889 |
aagaacgctatatcccaactgc |
26126910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 26036001 - 26036318
Alignment:
| Q |
7 |
agttcctcgttgaaaacgacttggtcccatgccttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtctgatat |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26036001 |
agttcctcgttgaaaacggcttggtcccatgcaacctccttggaaagccgtgtcgcgacacggtccaaaagctcaattgaaggaatggttggtctgatat |
26036100 |
T |
|
| Q |
107 |
agaagaaaccagcattgtaaacaaatatcctcctggtaaaaacgccactagaccaacccatc-cagggtcgtcgaagacatcgttatagccgtaagctgt |
205 |
Q |
| |
|
|||||||||| | ||||||||| |||||||| ||||| | || | || |||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26036101 |
agaagaaaccggaattgtaaacccatatcctcatggtatgagcgtatcgagcccaacccatcgcaggttcgtcgaagacatcgttatagccgtaagctgt |
26036200 |
T |
|
| Q |
206 |
catgttattatgaccgtcgctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgatagaaga |
305 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||| |
|
|
| T |
26036201 |
catgttattatggccatcactcatggactcgacatctgaatcacggtatagatgatcaaaaggattctgtaaatatacaatgtcaacgtctgataagaga |
26036300 |
T |
|
| Q |
306 |
acactgtatcccaactgc |
323 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
26036301 |
acaccatatcccaactgc |
26036318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 323
Target Start/End: Original strand, 26064645 - 26064966
Alignment:
| Q |
3 |
aaagagttcctcgttgaaaacgacttggtcccatgccttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtctg |
102 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| |||||||| ||||| | ||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26064645 |
aaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgccacacgatccaaaagctcaattgaaggaatggttggtcta |
26064744 |
T |
|
| Q |
103 |
atatagaagaaaccagcattgtaaacaaatatcctcctggtaaaaacgccactagaccaacccatccaggg-tcgtcgaagacatcgttatagccgtaag |
201 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| | ||| ||| | ||||||||||||| ||| || || ||| |||||| ||||| |||| |
|
|
| T |
26064745 |
atatagaagaaaccagaattgtaaacccatatcctagttgtatgaactattcgagaccaacccatcacgggctcatcatagatatcgttgtagccataag |
26064844 |
T |
|
| Q |
202 |
ctgtcatgttattatgaccgtcgctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgatag |
301 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
26064845 |
ctgtcatgttattatgaccatcgctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatatataatatcggtgtctgatag |
26064944 |
T |
|
| Q |
302 |
aagaacactgtatcccaactgc |
323 |
Q |
| |
|
|||||| || ||||||| |||| |
|
|
| T |
26064945 |
aagaacgctatatcccagctgc |
26064966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University