View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_low_5 (Length: 750)

Name: NF15735_low_5
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_low_5
NF15735_low_5
[»] chr5 (1 HSPs)
chr5 (71-742)||(22836806-22837477)


Alignment Details
Target: chr5 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 71 - 742
Target Start/End: Original strand, 22836806 - 22837477
Alignment:
Q  71 tatgcacatggtacggtgtctcttgtcttaggaaccgtgtctcccgcctagtcctcgaaaacctcgacctccacggctcgatggaaccgttaaccgcact 170  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22836806 tatgcacatggtacggtgtctcttgtctaagaaaccgtgtctcccgccttgtcctcgaaaacctcgacctccacggctcgatggaaccgttaaccgcact 22836905  T
Q  171 tactcagctccgtgtactcagccttaaacgcaaccgtttcaacggtcccattccaaatctctccaacttaacttcactaagacttctgttcctttcttac 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22836906 tactcagctccgtgtactcagccttaaacgcaaccgtttcaacggtcccattccaaatctctccaacttaacttcactaagacttttgttcctttcttac 22837005  T
Q  271 aataatttctccggtgagtttccggaaagtttaaccttgttaacccgtctctaccggcttgatctcgctgataacaatctctctggtgagattccggtga 370  Q
    || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22837006 aacaatttctccggtgagtttcccgaaagtttaacctcgttaacccgtctctaccggcttgatctcgctgataacaatctctctggtgagattccggtga 22837105  T
Q  371 atgtcaaccgtttgtctagtctcctcactctcaaactcgatggaaatcaaatccatggacacattccaaatataaacctgtcttacctccaagactttaa 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22837106 atgtcaaccgtttgtctagtctcctcactctcaaactcgatggaaatcaaatccatggacacattccaaatataaacctgtcttacctccaagacttcaa 22837205  T
Q  471 tgtctctggtaacaacctctctggtagagtacctgaattactttcgggttttcctgattcatcttttgctcaaaacccgtctttatgtggtgctccattg 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22837206 tgtctctggtaacaacctctctggtagagtacctgaattactttcgggttttcctgattcatcttttgctcaaaacccgtctttatgtggtgctccattg 22837305  T
Q  571 caaaaatgtaaagacgttcctgcccttgcttcgtcgttggttccatcttcttcgagtataatgtcgagaaacaagactaatagaaatggtggtccaagaa 670  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  22837306 caaaaatgtaaagacgttcctgcccttgcttcatcgttggttccatcttcttcaagtataatgtcgagaaacaagactcatagaaatggtggtccaagaa 22837405  T
Q  671 tggggactttggtgttaatcgccattatcctcggcgatgtattagtactcgcagttgtctcattgcttctct 742  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22837406 tggggactttggttttaatcgccattatcctcggcgatgtattagtactcgcagttgtctcattgcttctct 22837477  T

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