View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_50 (Length: 321)
Name: NF15735_low_50
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 12492950 - 12493237
Alignment:
| Q |
19 |
ctcctcccacatcatgcttatgctaccaacataagcaccaaactcaaactcacctttctctccctctttctccatggaattgattacatcctgaaaattc |
118 |
Q |
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| T |
12492950 |
ctcctcccacatcatgcttacgctaccaacataagcaccaaactcaaactcacctttctctccctctttctccatggaattgattacatcctgaaaattc |
12493049 |
T |
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| Q |
119 |
aacttagtttcacaccttccactgttgattaaccatagtaagaagagggtgttctagagagagtatgtattcaacataaacaactatgtaatttgcttct |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12493050 |
aacttagtttcacaccctccactgttgattaaccatagtaagaagagggtgttctagagagagtatgtattcaacataaacaactatgtaatttgcttat |
12493149 |
T |
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| Q |
219 |
gggaacaatggcttcctagcattatcatta-----tacatcatttctaaaacaagtattattattcataaattaatatttgttggcat |
301 |
Q |
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| T |
12493150 |
gggaacaatggcttgctagcattatcattatacattacatcatttctaaaacaagtattactattcataaattaatatttgttggcat |
12493237 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 36956717 - 36956679
Alignment:
| Q |
263 |
aacaagtattattattcataaattaatatttgttggcat |
301 |
Q |
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| T |
36956717 |
aacaagtattattattcataaattaatatttgttggcat |
36956679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 47304297 - 47304244
Alignment:
| Q |
162 |
agagggtgttctagagagagtatgtattcaacataaacaactatgtaatttgct |
215 |
Q |
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| T |
47304297 |
agagggtgttctggagcgagtctgtattcaacagaaacaactattgaatttgct |
47304244 |
T |
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