View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_low_54 (Length: 300)

Name: NF15735_low_54
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_low_54
NF15735_low_54
[»] chr7 (3 HSPs)
chr7 (6-285)||(31744842-31745126)
chr7 (58-114)||(44822054-44822110)
chr7 (58-113)||(22283565-22283620)
[»] chr4 (4 HSPs)
chr4 (51-111)||(52315118-52315178)
chr4 (57-112)||(15173223-15173278)
chr4 (51-114)||(55437165-55437228)
chr4 (51-115)||(27043747-27043811)
[»] chr3 (3 HSPs)
chr3 (51-115)||(25447162-25447226)
chr3 (57-114)||(22203524-22203581)
chr3 (57-110)||(30668892-30668944)
[»] chr5 (6 HSPs)
chr5 (57-114)||(10640048-10640105)
chr5 (57-113)||(39594902-39594958)
chr5 (57-113)||(41419414-41419470)
chr5 (57-113)||(41534533-41534589)
chr5 (51-110)||(11064755-11064814)
chr5 (50-116)||(35445760-35445826)
[»] chr2 (3 HSPs)
chr2 (57-114)||(26202123-26202180)
chr2 (51-114)||(27317468-27317531)
chr2 (81-113)||(2964728-2964760)
[»] chr1 (3 HSPs)
chr1 (57-102)||(6102248-6102293)
chr1 (74-115)||(47020626-47020667)
chr1 (51-111)||(1432604-1432664)
[»] chr8 (2 HSPs)
chr8 (67-115)||(42893407-42893455)
chr8 (57-115)||(26215554-26215612)
[»] chr6 (1 HSPs)
chr6 (83-115)||(29940865-29940897)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 31744842 - 31745126
Alignment:
Q  6 cacagaacctttatatgtggctcaattcctgataacttattttcat----tctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31744842 cacagaacctttatatgtggctcaattcctgataacttattttcataaattctttcaaacaatctcataaaatttacgtcggtagataaattcaaataag 31744941  T
Q  102 ttaatccaaacagatacattttggaaagtgttttaaaaatcaaacggaatatcaaccaatgaacacgagccttctaaactttggttaaattgttctacac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  31744942 ttaatccaaacagatacattttggaaagtgttttaaaaatcaaacggaacatcaaccaatgaacacaagccttctaaactttggttaaattgttctaccc 31745041  T
Q  202 tagtcaaatatttagatgaaatcgcaatcaaagtgtgcaaataatcaaaccatattgtgtgtattcatgattaa-cggttaaacc 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31745042 tagtcaaatatttagatgaaatcgcaatcaaagtgtgcaaataatcaaaccatattgtgtgtattcatgattaaccggttaaacc 31745126  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 44822054 - 44822110
Alignment:
Q  58 aaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacag 114  Q
    |||||||||||||||| ||| ||| | ||||||| |||||||||| |||||||||||    
T  44822054 aaacaatctcacaaaacttatgtcagcagataaactcaaataagtcaatccaaacag 44822110  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 22283620 - 22283565
Alignment:
Q  58 aaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaaca 113  Q
    ||||| |||||||||||||| | | |||||||| ||||||||||| ||||||||||    
T  22283620 aaacagtctcacaaaatttatgacagtagataagttcaaataagtcaatccaaaca 22283565  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 52315178 - 52315118
Alignment:
Q  51 ttctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaa 111  Q
    ||||| ||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||    
T  52315178 ttcttccaaacaatctcacaaaacttacgtcagtagataaactcaaataagtcaatccaaa 52315118  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 15173278 - 15173223
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaac 112  Q
    |||||| |||||||||| ||| ||| |||||||| ||||||||||| |||||||||    
T  15173278 caaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 55437165 - 55437228
Alignment:
Q  51 ttctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacag 114  Q
    |||||||||||||| |||||||| ||| | | ||||||||| |||||||||  |||||||||||    
T  55437165 ttctttcaaacaatttcacaaaacttatggcagtagataaactcaaataagccaatccaaacag 55437228  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 27043811 - 27043747
Alignment:
Q  51 ttctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacaga 115  Q
    ||||| |||||| | |||||||| ||| ||| ||||||||  |||||||||| ||||||||||||    
T  27043811 ttcttccaaacagtttcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacaga 27043747  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 25447226 - 25447162
Alignment:
Q  51 ttctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacaga 115  Q
    ||||| |||||| |||||||||| ||| ||| ||||||||| |||||||||| ||||||||||||    
T  25447226 ttcttgcaaacagtctcacaaaacttatgtcagtagataaactcaaataagtcaatccaaacaga 25447162  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 22203524 - 22203581
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacag 114  Q
    |||||| |||||||||||| | ||||||||||||  || |||| ||||||||||||||    
T  22203524 caaacagtctcacaaaattaatgtcggtagataagctcgaatatgttaatccaaacag 22203581  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 30668944 - 30668892
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaa 110  Q
    |||||||| |||||||||||| |||  ||||||| |||||||||||||||||||    
T  30668944 caaacaatttcacaaaatttatgtcaatagataa-ttcaaataagttaatccaa 30668892  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 10640048 - 10640105
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacag 114  Q
    |||||||| |||||||| ||| ||| ||||||||| ||||||||| ||||||||||||    
T  10640048 caaacaatatcacaaaacttatgtcagtagataaactcaaataagctaatccaaacag 10640105  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 39594902 - 39594958
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaaca 113  Q
    |||||||||| |||||| ||| ||||||||||||  |||||||||| ||||||||||    
T  39594902 caaacaatctaacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 41419414 - 41419470
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaaca 113  Q
    ||||||||||||||||||||| ||| |||||| |  |||||||||| ||||||||||    
T  41419414 caaacaatctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaaca 41419470  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 41534533 - 41534589
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaaca 113  Q
    ||||||||||||||||||||| ||| |||||| |  |||||||||| ||||||||||    
T  41534533 caaacaatctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaaca 41534589  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 11064755 - 11064814
Alignment:
Q  51 ttctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaa 110  Q
    |||| |||||||||||||||||| ||| || |||||||||| |||||||| | |||||||    
T  11064755 ttctctcaaacaatctcacaaaacttatgttggtagataaactcaaataaatcaatccaa 11064814  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 35445826 - 35445760
Alignment:
Q  50 attctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacagat 116  Q
    ||||| ||||| | |||||||||| ||| ||| ||||||||| ||||||||| | ||||||||||||    
T  35445826 attctgtcaaagagtctcacaaaacttatgtcagtagataaactcaaataagatgatccaaacagat 35445760  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 26202123 - 26202180
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacag 114  Q
    |||| |||||||||||| ||| ||| | |||||| |||||||||||||||||||||||    
T  26202123 caaagaatctcacaaaacttatgtcagcagataagttcaaataagttaatccaaacag 26202180  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 27317468 - 27317531
Alignment:
Q  51 ttctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacag 114  Q
    |||| ||||||| ||||| |||| ||| ||||||||||||  |||||||||| |||||||||||    
T  27317468 ttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaacag 27317531  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 2964760 - 2964728
Alignment:
Q  81 cggtagataaattcaaataagttaatccaaaca 113  Q
    |||||||||| ||||||||||||||||||||||    
T  2964760 cggtagataagttcaaataagttaatccaaaca 2964728  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 6102248 - 6102293
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagt 102  Q
    ||||||||||||||||||||| | ||||||||||| ||||||||||    
T  6102248 caaacaatctcacaaaatttatgccggtagataaactcaaataagt 6102293  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 47020626 - 47020667
Alignment:
Q  74 tttacgtcggtagataaattcaaataagttaatccaaacaga 115  Q
    |||| ||||||| |||||||||||||||| ||||||||||||    
T  47020626 tttaagtcggtaaataaattcaaataagtcaatccaaacaga 47020667  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 1432604 - 1432664
Alignment:
Q  51 ttctttcaaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaa 111  Q
    ||||| |||||| |||||||||||||| |||||| |||||  |||||||||  ||||||||    
T  1432604 ttcttccaaacagtctcacaaaatttatgtcggtggataagctcaaataagccaatccaaa 1432664  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 42893455 - 42893407
Alignment:
Q  67 cacaaaatttacgtcggtagataaattcaaataagttaatccaaacaga 115  Q
    ||||||| ||| | ||||||||||| |||||||||||||||||||||||    
T  42893455 cacaaaaattatgccggtagataaactcaaataagttaatccaaacaga 42893407  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 26215554 - 26215612
Alignment:
Q  57 caaacaatctcacaaaatttacgtcggtagataaattcaaataagttaatccaaacaga 115  Q
    ||||||||||||||||| || |||  ||| |||| ||||||||||| ||||||||||||    
T  26215554 caaacaatctcacaaaacttgcgtttgtaaataagttcaaataagtcaatccaaacaga 26215612  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 29940865 - 29940897
Alignment:
Q  83 gtagataaattcaaataagttaatccaaacaga 115  Q
    |||||||||||||||||||||||||||||||||    
T  29940865 gtagataaattcaaataagttaatccaaacaga 29940897  T

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