View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_low_55 (Length: 299)
Name: NF15735_low_55
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_55 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 12800459 - 12800171
Alignment:
| Q |
11 |
cagagatacaataactagcaaacccaaaccggttttgatttatagcatcagcagcttgtggaagagtgtacttcacaactggtatatatgattcagcaca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12800459 |
cagaaatacaataactagcaaacccaaaccggttttgatttatagcatcagcagcttgtggaagagtgtacttcacaactggtatatatgattcagcaca |
12800360 |
T |
|
| Q |
111 |
aaatgccaatgctttttccatttcacgatctgtagttttcttgatcaagctttcaatgtagttcaatgtgtcacttgcatttgtgagaatgttgtttacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12800359 |
aaatgccaatgctttttccatttcacgatctgtagttttcttgatcaagctttcaatgtagttcaatgtgtcacttgcatttgtgagaatgttgtttacc |
12800260 |
T |
|
| Q |
211 |
attactagggctacacctttgagatcggtttttggagcaagtgggtttgagtttagaatggagctacataggtcgtagaagggtgtttt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12800259 |
attactagggctacacctttgagatcggtttttggagcaagtgggtttgagtttagaatggagctacataggtcgtagaagggtgtttt |
12800171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 50631947 - 50632017
Alignment:
| Q |
50 |
ttatagcatcagcagcttgtggaagagtgtacttcacaactggtatatatgattcagcacaaaatgccaat |
120 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |||||||| ||||| ||||| ||||||||||| |||||| |
|
|
| T |
50631947 |
ttatagcatcagctgcttgtggaagaatgtatttcacaacaggtatgtatgactcagcacaaaaagccaat |
50632017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University