View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_low_6 (Length: 695)
Name: NF15735_low_6
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 12 - 680
Target Start/End: Original strand, 6527327 - 6527994
Alignment:
| Q |
12 |
aagaaaatgacattgaattgcatatcatagcctcaaatactagctttaaacattttgaaacaattaataatgaatatttttgcgacgaatcaaacccggt |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527327 |
aagaaaatgacattggattgcatatcatagcctcaaatactagctttaaacattttgaaacaattaataatgaatatttttgcgacgaatcaaacccggt |
6527426 |
T |
|
| Q |
112 |
atcctgagatttacaacagacatacatcctgcctaccaacacttacgcaagacccatgtgggtaatgaatatttttgtatgagatttgatataattgtag |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527427 |
atcctgagatttacaacagtcatacatcctgcctaccaacacttacgcaagacccatgtgggtaatgaatatttttgtatgagatttgatataattgtag |
6527526 |
T |
|
| Q |
212 |
ggaaatcaattcaaattttcaaataaatacaaatgagttaaaatttaagaggtacattttcagaggtggatgaatgtgtcttgatgcttagaaaatctca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6527527 |
ggaaatcaattcaaattttcaaataaatacaaatgagttaaaatttaagaggtacattttcagaggtggatgaatgtgtcttgatacttagaaaatctca |
6527626 |
T |
|
| Q |
312 |
caattataagaaagaggtgagacaattgatctccaccaatgagtaatacacaccaacattgaagttggattcagttagtcgagttagtgttgaaatattg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527627 |
caattataagaaagaggtgagacaattgatctccaccaatgagtaatacacaccaacattgaagttggattcagttagtcgagttagtgttgaaatattg |
6527726 |
T |
|
| Q |
412 |
gaaacataaactattgtttgagattgttggtagtattgagactctaatcgttttatatacagccacgacgggtcaaacattcgaccattttgcaattgtc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527727 |
gaaacataaactattgtttgagattgttggtagtattgagactctaatcgttttatatacagccacgacgggtcaaacattcgaccattttgcaattgtc |
6527826 |
T |
|
| Q |
512 |
c-tttatgacattagtgtcacaagaaaattgcctaataaaatcaatatggtgcaacaagaggattttgcttttgagtgttgctatatatatagcgaacac |
610 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6527827 |
cttttatgacattagtgtcacaagaaaattgcctaataaaatcaatatggtgcaacaagaggattttgcttttgagtgttgc--tatatatagcgaacac |
6527924 |
T |
|
| Q |
611 |
tctttcacaatgcattgcgaacgtagcatcaccattggatcttcatatcacacaatacatgggtggttgg |
680 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527925 |
actttcacaatgcattgcgaacgtagcatcaccattggatcttcatatcacacaatacatgggtggttgg |
6527994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 23976078 - 23976019
Alignment:
| Q |
211 |
gggaaatcaattcaaattttcaaataaatacaaatgagttaaaatttaagaggtacattt |
270 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
23976078 |
gggaaatcaattcaaatttacaaataaatgcaaataggtggaaatttaagagatacattt |
23976019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 48365061 - 48365007
Alignment:
| Q |
211 |
gggaaatcaattcaaattttcaaataaatacaaatgagttaaaatttaagaggta |
265 |
Q |
| |
|
||||||||||||||||||| || |||||| ||| ||||| |||||||||||||| |
|
|
| T |
48365061 |
gggaaatcaattcaaatttccatataaatgcaagtgagtagaaatttaagaggta |
48365007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University