View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_64 (Length: 265)
Name: NF15735_low_64
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 45547371 - 45547138
Alignment:
| Q |
19 |
gttatcctttgcctcttctcaccattatactcattctgagaaacactgacccgcaagaggtgtggaatccatgtagctttcttcaatttcatgtcataag |
118 |
Q |
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| T |
45547371 |
gttatcctttgcctcttctcaccattatactcattctgagaaacactgacccgcaagaggtgtggaatccatgtagctttcttcaatttcatgtcataag |
45547272 |
T |
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| Q |
119 |
gattctcttctccatcctg-nnnnnnnnncataaatgacaattggcatgcatgattcattctcgaacattaaaataatggtatccaatatgttacctgtg |
217 |
Q |
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| T |
45547271 |
gattctcttctccatcctgaaaaaaaaaacataaatgacaattggcatgcatgattcgttctcgaacattaaaataatggtatccaatatgttacctgtg |
45547172 |
T |
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| Q |
218 |
atttaaggttgtttagctcctcagcagggcaccc |
251 |
Q |
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| T |
45547171 |
atttaaggttgtctagctcctcagcagggcaccc |
45547138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 45551908 - 45551819
Alignment:
| Q |
48 |
ctcattctgagaaacactgacccgcaagaggtgtggaatccatgtagctttcttcaatttcatgtcataaggattctcttctccatcctg |
137 |
Q |
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| T |
45551908 |
ctcattctgagaaacactgacccgcaagaggtgtggaatccatgtagctttcttcaatttcattagatatggattctcttctccctcctg |
45551819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 45551748 - 45551700
Alignment:
| Q |
196 |
ggtatccaatatgttacctgtgatttaaggttgtttagctcctcagcag |
244 |
Q |
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| T |
45551748 |
ggtatccaatatcttacctgtgatctaaggtcgtttagctcatcagcag |
45551700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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