View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_65 (Length: 260)
Name: NF15735_low_65
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 35048456 - 35048221
Alignment:
| Q |
17 |
cattaatgccacatagtctcaactctcacgtattaattctgaccataaagttctgttgacaaacgtggagtaagaatgacttctagaggagatgctttga |
116 |
Q |
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| T |
35048456 |
cattaatgccaaatagtctcaactctcacgtattaattctgaccataaagttctgttgacaaacgtggagtaagaatgacttctagaggagatgctttga |
35048357 |
T |
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| Q |
117 |
cgttggtcagtccactttgttcaaccataccaactggtcctccatcttgagtcactatatcaaatccatgcaacaaagttgcaagtgttatttgaattag |
216 |
Q |
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| T |
35048356 |
cgttggtcagtccactttgttcaaccataccaactggtcctccatcttgagtcactatatcaaatccatgcaacaaagttgcaagtgttatttgaattag |
35048257 |
T |
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| Q |
217 |
cttaagaccaaatgatattccgggacacattcttct |
252 |
Q |
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| T |
35048256 |
cttaagaccaaatgatattccgggacacattcttct |
35048221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 252
Target Start/End: Complemental strand, 35026815 - 35026636
Alignment:
| Q |
73 |
tgacaaacgtggagtaagaatgacttctagaggagatgctttgacgttggtcagtccactttgttcaaccataccaactggtcctccatcttgagtcact |
172 |
Q |
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| T |
35026815 |
tgacaaacgtggactaaggatgacttgtagaggagaagctttgatgttggtcattccacttatttcaaccatatcaaccggtcctccatctgaagtcact |
35026716 |
T |
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| Q |
173 |
atatcaaatccatgcaacaaagttgcaagtgttatttgaattagcttaagaccaaatgatattccgggacacattcttct |
252 |
Q |
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| T |
35026715 |
atgtcaaacccatgcaacaatgtagcaagtgttatttgcataagttgaagaccaaatgagattccaggacacattcttct |
35026636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 74 - 252
Target Start/End: Complemental strand, 35040777 - 35040599
Alignment:
| Q |
74 |
gacaaacgtggagtaagaatgacttctagaggagatgctttgacgttggtcagtccactttgttcaaccataccaactggtcctccatcttgagtcacta |
173 |
Q |
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|||||||||||||||||||||||||| || ||||| ||||||| |||| ||||| ||||||||||||||| |||||||||||||||||| |||||| | |
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| T |
35040777 |
gacaaacgtggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaa |
35040678 |
T |
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| Q |
174 |
tatcaaatccatgcaacaaagttgcaagtgttatttgaattagcttaagaccaaatgatattccgggacacattcttct |
252 |
Q |
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| T |
35040677 |
tgtcaaacccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgagattccaggacatattcttct |
35040599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 252
Target Start/End: Complemental strand, 35032761 - 35032582
Alignment:
| Q |
73 |
tgacaaacgtggagtaagaatgacttctagaggagatgctttgacgttggtcagtccactttgttcaaccataccaactggtcctccatcttgagtcact |
172 |
Q |
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||||||||| ||| |||||||||||| || |||||| |||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||| |
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| T |
35032761 |
tgacaaacgcggattaagaatgacttgtaaaggagaggctttgacattggtcagtctacagtgttcaaccatattaactggtcctccatcttgagtcact |
35032662 |
T |
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| Q |
173 |
atatcaaatccatgcaacaaagttgcaagtgttatttgaattagcttaagaccaaatgatattccgggacacattcttct |
252 |
Q |
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|| | ||| ||||||||||| | |||||||| ||||| || | || ||||| |||||| ||||| ||||| |||||||| |
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| T |
35032661 |
atgttaaacccatgcaacaatgcagcaagtgtgatttgcatcaactgaagactaaatgagattccaggacatattcttct |
35032582 |
T |
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