View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_7 (Length: 693)
Name: NF15735_low_7
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 40940642 - 40941153
Alignment:
| Q |
1 |
ttcagattcagatagtgaatcaggtctatccagggatgatttgattaagctcatagctgagaaggaagaacgtttgaaactaaagaaaaaagaaattgag |
100 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
40940642 |
ttcagattcagatagtgaatcggatctatccagggatgatttgattaagcttgtagctgagaaggaagaacttttgaaactaaagaaaaaagagattgag |
40940741 |
T |
|
| Q |
101 |
aaaatgcaggataaagttctgcgtacgcatacttactctgaaatggagaatgtcatggacaggactagacgtgaagcagagaattaaacgaaatttgcta |
200 |
Q |
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|||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |
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| T |
40940742 |
aaaatgcaagataaagttctccgtac------ttacgctgaaatggagaatgtcatggacaggactagacgtgaagcagagaattcaaggaaattcgcta |
40940835 |
T |
|
| Q |
201 |
tacaggtcaaagtttgaacatttttgtcccaaataacttactcataannnnnnngctgatttatttaaatgtgctgtagaattttgcaaagagtttactt |
300 |
Q |
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| T |
40940836 |
tacaggtcaaaatttgaacatttttgtcccaaataacttactcataatttttttgctgatttatttaaatgtgctgtagaatttcgcaaagagtttactt |
40940935 |
T |
|
| Q |
301 |
gatgttgcggataatttgggaagagcttcatcagttgtaaaagaaagtttttccaaaattgatacgtcaagtga---ctccgctgaagcagtgaaactcc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
40940936 |
gatgttgcggataatttgggaagagcttcatcagttgtaaaagaaagtttttccaaaattgatacgtcaagtgactcctccgctgaagcggtgaaactcc |
40941035 |
T |
|
| Q |
398 |
tgaagacacttctggaaggtgttgagatgactgagaaacaacttccagaggtagagtgttctatatgtataaatata--atcatcatagccattctagca |
495 |
Q |
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| T |
40941036 |
tgaagacacttctggaaggtgttgaaatgactgagaaacaactttcagaggtagagtgttatatatgtataaatatatgatcatcgtagccattctatca |
40941135 |
T |
|
| Q |
496 |
tatagtctttattatact |
513 |
Q |
| |
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||||||||||||| |||| |
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| T |
40941136 |
tatagtctttattttact |
40941153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 565 - 678
Target Start/End: Original strand, 40941745 - 40941858
Alignment:
| Q |
565 |
ttggagatgatcttcttattctgannnnnnnaactatctcctattgatgttttgaaaaaactggatgnnnnnnngttctgaattgcagtggaaaggttgt |
664 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40941745 |
ttggagatgatcttcttattctgatttttttaactatctcctattgatgttttgaaaaaactggatgcttttttgttctgaattgcagtggaaaggttgt |
40941844 |
T |
|
| Q |
665 |
aaatatgatgatat |
678 |
Q |
| |
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| T |
40941845 |
aaatatgatgatat |
40941858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 572
Target Start/End: Original strand, 40941362 - 40941404
Alignment:
| Q |
530 |
caaaagccaatttcattttataacttataaacatattggagat |
572 |
Q |
| |
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| T |
40941362 |
caaaagccaatttcattttaaaacttacaaacatattggagat |
40941404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 275 - 460
Target Start/End: Original strand, 21505120 - 21505305
Alignment:
| Q |
275 |
tgtagaattttgcaaagagtttacttgatgttgcggataatttgggaagagcttcatcagttgtaaaagaaagtttttccaaaattgatacgtcaagtga |
374 |
Q |
| |
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|||||| |||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||| |||||||| | | | || |
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| T |
21505120 |
tgtagagttttgccaagagtttacttgatgttgctgacaatttgggaagagcttcttcagttgtaaaggacagtttttcaaaaattgaatcacctaaaga |
21505219 |
T |
|
| Q |
375 |
ctccgctgaagcagtgaaactcctgaagacacttctggaaggtgttgagatgactgagaaacaacttccagaggtagagtgttcta |
460 |
Q |
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| T |
21505220 |
atctgatcaagccgcaccactcctgaaaacacttctggaaggtgttgaaatgactgagaaacaacttgcagaggtagactgttcta |
21505305 |
T |
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