View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15735_low_72 (Length: 250)

Name: NF15735_low_72
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15735_low_72
NF15735_low_72
[»] chr4 (3 HSPs)
chr4 (19-209)||(10821213-10821402)
chr4 (22-183)||(44721933-44722094)
chr4 (85-183)||(19614436-19614535)
[»] chr7 (1 HSPs)
chr7 (22-183)||(43304893-43305054)
[»] chr8 (1 HSPs)
chr8 (85-183)||(11662000-11662099)
[»] chr5 (3 HSPs)
chr5 (94-183)||(9162395-9162487)
chr5 (94-183)||(9162141-9162232)
chr5 (85-197)||(30671765-30671879)
[»] chr1 (1 HSPs)
chr1 (85-183)||(22061203-22061303)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 10821402 - 10821213
Alignment:
Q  19 gtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattagcttgtgaaaatccatgatcaattgttgaattaaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||     
T  10821402 gtaaaaactctttgaatcactttttcccctttgaatcactttggggtcttattttttt-aattagcttgtgaaaatccaggatcaattgttgaattaaat 10821304  T
Q  119 tgatttaaaagaatgggttctttgaatcactttcttctgtgtatataaaatgtcgattgatttttgctttcatcacttatttgatataact 209  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  10821303 agatttaaaagaatgggttctttgaatcactttcttctgtgtataaaaaatgtcgattgatttttgttttcatcacttatttgatataact 10821213  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 44722094 - 44721933
Alignment:
Q  22 aaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattagcttgtgaaaatccatgatcaattgttgaattaaaatga 121  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||          ||||| ||||| ||||||||||||||||| ||||||| |  ||    
T  44722094 aaaactctttgaatcactttttcccctttgaatcactttcagatctt-tctttttttattagtttgtg-aaatccatgatcaattgctgaattatataga 44721997  T
Q  122 tttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt 183  Q
    ||  |||||| ||||| ||||||||||||| |||  |||||||| | ||||| |||||||||||    
T  44721996 ttagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt 44721933  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 19614436 - 19614535
Alignment:
Q  85 ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc-tgtgtatataaaatgtcgattgattttt 183  Q
    |||| |||||||||||||||| ||||||| |||  ||||  ||||||   ||||||||| |||||| |||| |||||||| ||||||| |||||||||||    
T  19614436 ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttcttgtgtataaaaaatgttgattgattttt 19614535  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 43304893 - 43305054
Alignment:
Q  22 aaaactctttgaatcactttttcccctttgaatcactttggggtcttannnnnnnnaattagcttgtgaaaatccatgatcaattgttgaattaaaatga 121  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||          ||||| ||||| ||||||||||||||||| ||||||| |  ||    
T  43304893 aaaactctttgaatcactttttcccctttgaatcactttcagatctt-tctttttttattagtttgtg-aaatccatgatcaattgctgaattatataga 43304990  T
Q  122 tttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt 183  Q
    ||  |||||| ||||| ||||||||||||| |||  |||||||| | ||||| |||||||||||    
T  43304991 ttagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt 43305054  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 11662099 - 11662000
Alignment:
Q  85 ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc-tgtgtatataaaatgtcgattgattttt 183  Q
    |||| |||||||||||||||| ||||||| |||  ||||  ||||||   ||||||||| |||||| |||| |||||||| ||||||| |||||||||||    
T  11662099 ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttcttgtgtataaaaaatgttgattgattttt 11662000  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 9162395 - 9162487
Alignment:
Q  94 tccatgatcaa-ttgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt 183  Q
    ||||||||||| |||||||||||||  ||||  |||||| ||||| ||||||||||||| |||  |||||||| | ||||| |||||||||||    
T  9162395 tccatgatcaaattgttgaattaaatagattagaaagaaagggttatttgaatcactttattctttgtgtataaataatgttgattgattttt 9162487  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 9162141 - 9162232
Alignment:
Q  94 tccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgattttt 183  Q
    |||||||||||||| |||||||||  ||||  |||||| || || ||||||||||||| |||  |||||||| | ||||| |||||||||||    
T  9162141 tccatgatcaattgctgaattaaatagattagaaagaaaggattatttgaatcactttattctttgtgtataaataatgttgattgattttt 9162232  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 30671765 - 30671879
Alignment:
Q  85 ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttct--gtgtatataaaatgtcgattgatttt 182  Q
    |||| |||||||||||||||| ||||||| |||  ||||  |||||    ||||||||| |||||| |||||  ||||||| ||||||| ||||||||||    
T  30671765 ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagatcaagttctttgattcacttgcttctttgtgtataaaaaatgttgattgatttt 30671864  T
Q  183 tgctttcatcactta 197  Q
    |  ||| ||||||||    
T  30671865 tttttttatcactta 30671879  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 22061203 - 22061303
Alignment:
Q  85 ttgtgaaaatccatgatcaattgttgaattaaaatgatttaaaagaatgggttctttgaatcactttcttc--tgtgtatataaaatgtcgattgatttt 182  Q
    |||| |||||||||||||||| ||||||| |||  ||||  ||||||   ||||||||| |||||| ||||  | |||||| ||||||| ||||||||||    
T  22061203 ttgtcaaaatccatgatcaatagttgaatgaaatagattagaaagaacaagttctttgattcacttacttctttatgtataaaaaatgttgattgatttt 22061302  T
Q  183 t 183  Q
    |    
T  22061303 t 22061303  T

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