View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_75 (Length: 241)
Name: NF15735_low_75
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 54713385 - 54713178
Alignment:
| Q |
20 |
atataaaataatcttatgaaa-gtgccatctcataaaagaagacnnnnnnnn------ttaagtcccaaccctcagcttctctaaaaacggatctcttct |
112 |
Q |
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| T |
54713385 |
atataaaataatcttatgaaaagtgccatctcataaaagaagacaaaaaaaaaaaaaattaagtcccaaccctcatcttctctaaaaacggatctcttct |
54713286 |
T |
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| Q |
113 |
ctctccccaccaccatccattgccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcttctcctactc |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54713285 |
ctctccccaccaccatacattgccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcttctcctactc |
54713186 |
T |
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| Q |
213 |
acccccgc |
220 |
Q |
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|||||||| |
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| T |
54713185 |
acccccgc |
54713178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 32971790 - 32971987
Alignment:
| Q |
25 |
aaataatcttatgaaagtgccatctcataaaagaagacnnnnnnnn-ttaagtcccaaccctcagcttctctaaaaacggatctc--ttctctctcccca |
121 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||| | |
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| T |
32971790 |
aaataatcttatgaaagtgccagctcataaaagaagacaaaaaaaaattaagtcccaaccctt-gcttctctaaaaacagatctctcttctctctcccaa |
32971888 |
T |
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| Q |
122 |
ccaccatccattgccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcttctcctactcacccccgc |
220 |
Q |
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| T |
32971889 |
ccgccatccactgccaccgccgcaaactccgaccacccctccgccccaactccgatttcaacaactcaactctctctttcttcccctactcacccccgc |
32971987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 41665126 - 41664976
Alignment:
| Q |
71 |
ttaagtcccaaccctcagcttctctaaaaacggatctct-tctctctccccaccaccatccattgccatcgccgcaaactccgaccatcctttcgtccca |
169 |
Q |
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|||||||| ||||||| |||||||||||||| ||||||| | |||||||||||| ||||||| ||||| ||||||||||||||||| || | || |||| |
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| T |
41665126 |
ttaagtcctaaccctccgcttctctaaaaacagatctctctttctctccccaccgccatccactgccactgccgcaaactccgaccacccctccgcccca |
41665027 |
T |
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| Q |
170 |
gctccgatttcaacaactcaactctctctttcttctcctactcacccccgc |
220 |
Q |
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| T |
41665026 |
gctccgatttcaacaactcaactctctctttcttctcctactcacccccgc |
41664976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 41665185 - 41665143
Alignment:
| Q |
20 |
atataaaataatcttatgaaagtgccatctcataaaagaagac |
62 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||| |
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| T |
41665185 |
atataaaataatcttatgaaagtgtcagctcataaaagaagac |
41665143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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