View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_77 (Length: 239)
Name: NF15735_low_77
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 54740122 - 54740045
Alignment:
| Q |
116 |
atggttaaagcaattcacgtacataattatgtttgaaaaatggctggctaatgaatatcatgttatgattgaacattg |
193 |
Q |
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| T |
54740122 |
atggttaaagcaattcacgtacataattatgtttgaaaaatggctggctaatgaatatcatgttatgattgaacattg |
54740045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 54740222 - 54740179
Alignment:
| Q |
16 |
gataagacaattcaaacaattacgtatagtaggtggttaatggt |
59 |
Q |
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| T |
54740222 |
gataagacaattcaaacaattacgtatagtaggtggttaatggt |
54740179 |
T |
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