View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_low_79 (Length: 238)
Name: NF15735_low_79
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_79 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 35029812 - 35029607
Alignment:
| Q |
15 |
aatataaacactaacgcatgttatgtgtgacagtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaat |
114 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35029812 |
aatataaacactaacgcatgttttgtgtgacagtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcgagaggcaaat |
35029713 |
T |
|
| Q |
115 |
tgtgaaaacaagtggattggatttgttggaaaatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35029712 |
tgtgaaaacaagtggattggatttgttggaaaatggagtgatgagggtaagatcattcttatacttgttatgttgcttggaagactcaagaaattcaaca |
35029613 |
T |
|
| Q |
215 |
cggatg |
220 |
Q |
| |
|
|||||| |
|
|
| T |
35029612 |
cggatg |
35029607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 34970472 - 34970310
Alignment:
| Q |
58 |
aacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgagg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||| | |
|
|
| T |
34970472 |
aacgtaggatttactatgggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatg |
34970373 |
T |
|
| Q |
158 |
agggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatg |
220 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||||| || || | |||||||| ||||| |
|
|
| T |
34970372 |
agggtaagatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatg |
34970310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 34952629 - 34952478
Alignment:
| Q |
46 |
agtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaa |
145 |
Q |
| |
|
||||||||| ||||||||||||| | | |||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34952629 |
agtgcatatgggaacgtaggattttcaacaggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaa |
34952530 |
T |
|
| Q |
146 |
aatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaag |
197 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
34952529 |
aatggagtgatgagggtaagatcattctcatatttgttatgttgtttggaag |
34952478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University