View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_80 (Length: 236)
Name: NF15735_low_80
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32506306 - 32506530
Alignment:
| Q |
1 |
cccatttataaaattgaacatagtccccactttcttgattcacaactatgccttaatgtcaacnnnnnnnnnnn----ctacattccaaaattactctat |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32506306 |
cccatttataaaattgaacatagtccccactttcttgattcacaactatgccttaatgtcaaaaaaaaaaaaaaaaaactacattccaaaattactctat |
32506405 |
T |
|
| Q |
97 |
tcccttattagcattttccattctttatttatgttgaagaacgtgaactttctatttatattgcctaagagtcagaaccataagataataatgtccctag |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32506406 |
tcccttattagcattttccattctttatttatgttgaagaacgtgaactttctatttatattgcctaagagtcagaaccataagataataatgtccctag |
32506505 |
T |
|
| Q |
197 |
agtctacacatgtagatgttttttg |
221 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
32506506 |
agtctacacatgtagatgttttttg |
32506530 |
T |
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