View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_81 (Length: 235)
Name: NF15735_low_81
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_81 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 33680963 - 33680756
Alignment:
| Q |
17 |
cacctatagtatgacttatgagattagaaaaagattatggtacaaatttatttatttgaaagttgcggcatttatattgcatcgttgtgattgtctaa-- |
114 |
Q |
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| T |
33680963 |
cacctatagtatgacttatgagattagaaaaagattatggtacaaatttatttatttgaaagttgcggcatttatactgcatcgttgtgattgtctaatt |
33680864 |
T |
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| Q |
115 |
-nnnnnnnnnaacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggcgtgct--gagagagactcactcagaaatgtacaa |
211 |
Q |
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| T |
33680863 |
ttttttttttaagaagtcaaaatggaatataatattaaaccaagagtgaatcaccccgcacaaggcgtactgagagagagactcactcagaaatgtacaa |
33680764 |
T |
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| Q |
212 |
agtcacag |
219 |
Q |
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|||||||| |
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| T |
33680763 |
agtcacag |
33680756 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 37124942 - 37124880
Alignment:
| Q |
124 |
aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggcgtgctga |
186 |
Q |
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| T |
37124942 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcactctgcacaaggcgtgctga |
37124880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 248088 - 248033
Alignment:
| Q |
124 |
aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggc |
179 |
Q |
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| T |
248088 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcgctccgcacaaggc |
248033 |
T |
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