View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_85 (Length: 217)
Name: NF15735_low_85
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_85 |
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| [»] scaffold0056 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 21212770 - 21212582
Alignment:
| Q |
13 |
catcacatccaacatgactatattaatatttgctatgatatttatttaattttccatcccaatgcattattaatatcactcttttttcatcctcatgtca |
112 |
Q |
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| T |
21212770 |
catcacatccaacatgactatattaatatttgctatgatatttatttaattttccatcccaatgcattattaatatcattcttttttcatcctcatgtca |
21212671 |
T |
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| Q |
113 |
tcaatgtacatttttccttcaagctggcgtgagaaatatcctttgaagaaatcttccacactaatgtcattgaatactgcaggggtttt |
201 |
Q |
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| T |
21212670 |
tcaatgtacatttttccttcaagctggcgtgagaaatatcctttgaagaaatcttccacactaatgtcgttgaacactgcaggggtttt |
21212582 |
T |
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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 26913552 - 26913714
Alignment:
| Q |
39 |
tatttgctatgatatttatttaattttccatcccaatgcattattaatatcactcttttttcatcctcatgtcatcaatgtacatttttccttcaagctg |
138 |
Q |
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| T |
26913552 |
tatttgctatgatctttatttaattttccatgccaatgcattattactatcactcatttttcatcctcatgtcatcaatgtacaattttccttcaagctt |
26913651 |
T |
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| Q |
139 |
gcgtgagaaatatcctttgaagaaatcttccacactaatgtcattgaatactgcaggggtttt |
201 |
Q |
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| T |
26913652 |
gcgtgagaaatatcctttgaagaaatcttccacactaatgtccttgaacactgcaggagtttt |
26913714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 61907 - 61983
Alignment:
| Q |
95 |
tttttcatcctcatgtcatcaatgtacatttttccttcaagctggcgtgagaaatatcctttgaagaaatcttccac |
171 |
Q |
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| T |
61907 |
ttttccatcctcatgacatcaatgtgtgattttccttcaagcttgcgtgagaaatatgctttaaagaaatcttccac |
61983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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