View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15735_low_86 (Length: 203)
Name: NF15735_low_86
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 42401812 - 42401975
Alignment:
| Q |
23 |
ttcttgatccagtgctgcacacaattcgttgagaagaaagcatcgctaataaagcccagtcgatgccagatggctgcggaatgcttgcagtcgcggccac |
122 |
Q |
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| T |
42401812 |
ttcttgatccagtgctgcacacaattcgttgagaagaaagcattgctaataaagcccattcgatgccagatggctgcggaatgcttgcagtcgcggacac |
42401911 |
T |
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| Q |
123 |
agtggaggaagctttcatcttcctccccacagcgcgaacaaatagctgttggggtcatgtttct |
186 |
Q |
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| T |
42401912 |
agtggaggaagctttcatcttcctccccacagcgcgaacaaatagctgttggagtcatgtttct |
42401975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 16323889 - 16323811
Alignment:
| Q |
85 |
atgccagatggctgcggaatgcttgcagtcgcggccacagtggaggaagctttcatcttcctccccacagcgcgaacaa |
163 |
Q |
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| T |
16323889 |
atgccagatagctgcagaatgtttacagtcgcggacacaatgcaagaagctttcatcattttccccgcagcgcgaacaa |
16323811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 37151051 - 37151183
Alignment:
| Q |
38 |
tgcacacaattcgttgagaagaaagcatcgctaataaagcccagtcgatgccagatggctgcggaatgcttgcagtcgcggccacagtggaggaagcttt |
137 |
Q |
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| T |
37151051 |
tgcaaacagttcgtagagaagaaagcatcgctaataaaacccattcgatgccagatggctgcggaatacttgcagtcgcggacacagtggaggaaacttt |
37151150 |
T |
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| Q |
138 |
catcttcctccccacagcgcgaacaaatagctg |
170 |
Q |
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| T |
37151151 |
catcttcctccccacagcgcgaacaagtagctg |
37151183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 39463725 - 39463584
Alignment:
| Q |
29 |
atccagtgctgcacacaattcgttgagaagaaagcatcgctaataaagcccagtcgatgccagatggctgcggaatgcttgcagtcgcggccacagtgga |
128 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| |||| |||| | ||||||||||||||| || || |||||||| ||| ||||||| | |
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| T |
39463725 |
atccagtgctgcacacaattcgtagagaagaaggcatcgctgttaaaacccattttatgccagatggctgcagagtgtttgcagtcacggacacagtgta |
39463626 |
T |
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| Q |
129 |
ggaagctttcatcttcctccccacagcgcgaacaaatagctg |
170 |
Q |
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| T |
39463625 |
agaaactttcatcatcctccccacagcgcgaacaagtagctg |
39463584 |
T |
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