View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15735_low_9 (Length: 649)
Name: NF15735_low_9
Description: NF15735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15735_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 37309513 - 37310145
Alignment:
| Q |
1 |
ttttgactatctcacttttcattttgaatgctttatagaagtatgtattgcttcatgtttgattctagttttctaactttcattttccttttttccctct |
100 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37309513 |
ttttgattatctcgcttttcattttgaatgctttatagaagcatgtattgcttcatgtttgattctagttttctaactttcattttccttttttccctct |
37309612 |
T |
|
| Q |
101 |
tgcagatcaggtaggtatattatgatgattatgtttttagcttgatggttgttctt-gttcacaaacaatatgagaatgtaaaaaaggtcaatgcctgaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37309613 |
tgcagatcaggtaggtatattatgatgattatgtttttagcttgatggttgttctttgttcacaaacaatatgagaatgtaaaaaaggtcaatgcctgaa |
37309712 |
T |
|
| Q |
200 |
tttaaagctggttctatacgaacaggtcttgctaagggtgcaactgtggttataataatagcaggaatatttggacttctattattagttatctatatat |
299 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37309713 |
tttaaagtttgttctatacgaacaggtcttgctaagggtgcaactgtgggtataataatagcaggaatatttggacttctattattagttatctatatat |
37309812 |
T |
|
| Q |
300 |
atgtcagatacttccgcaagaaggaagaagagaaaactaaactggctgaagcgctttcaactcaagatggtaatagcagattttgtattcatattctatg |
399 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
37309813 |
atgtcagatacttcaaaaagaaggaagaagagaaaactaaactggctgaagcactttcaactcaagatggtaatagtagattttgcattcatattctatg |
37309912 |
T |
|
| Q |
400 |
ttcttataatataaacacacatgtatcaatatttgcgagagtttaagaaaagagcttatcttataatggaagttgtttaattatttcaataatcttccca |
499 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
37309913 |
ttcttataatacaaacacacatgaatcaatatttgagagagtttaagaaaatagcatatctcataatagaagttgtttatttatttcaataatcttccca |
37310012 |
T |
|
| Q |
500 |
tgatagcttatagaatcaacttactacttatatgaaaatgtttaaccatatttcctctgataatagtaatagcttatattagctgacttttgtctcaggt |
599 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37310013 |
tgatagcttatagaaacaacttactacttatatgaaaaagtttaaccatatttcctctgataatagtaatagcttatattttctgacttttgtctcaggt |
37310112 |
T |
|
| Q |
600 |
agtgcagagtatgaaatttcaggatccagtgtg |
632 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
37310113 |
agtgcagagtatgaaacttcaggatccagtgtg |
37310145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 154 - 342
Target Start/End: Original strand, 37237777 - 37237969
Alignment:
| Q |
154 |
cttgttcacaaacaatatgagaatgtaaaaaaggtcaatgcct-----gaatttaaagctggttctatacgaacaggtcttgctaagggtgcaactgtgg |
248 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||||||||| | || ||||| |||||| ||| | ||||| ||||||||||| || |||| | |
|
|
| T |
37237777 |
cttgttcacaaa-aatatgagaatggacaaaaggtcaatgcttcctgtgagcttaaatttggttcaatataagcaggtattgctaagggttcagctgttg |
37237875 |
T |
|
| Q |
249 |
ttataataatagcaggaatatttggacttctattattagttatctatatatatgtcagatacttccgcaagaaggaagaagagaaaactaaact |
342 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
37237876 |
gtatagctatggcaggaatatttggacttctattatttgttatctatatatatgccaaatacttccaaaagaaggaagaagagaaaactaaact |
37237969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 33595785 - 33595725
Alignment:
| Q |
282 |
tattagttatctatatatatgtcagatacttccgcaagaaggaagaagagaaaactaaact |
342 |
Q |
| |
|
|||| |||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
33595785 |
tatttgttatctatatatatgccaaatacttccaaaagaaggaagaagagaaaactaaact |
33595725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 630
Target Start/End: Original strand, 37238200 - 37238237
Alignment:
| Q |
593 |
ctcaggtagtgcagagtatgaaatttcaggatccagtg |
630 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
37238200 |
ctcaggtagtgcagaatatgaaacttcaggatccagtg |
37238237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University