View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_high_11 (Length: 333)
Name: NF15736_high_11
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 3566925 - 3566643
Alignment:
| Q |
13 |
gaagtgctacaacaatcaaaaccaacacctaattacactaattgggaattcagcttcggtaatatgctaaaggggaaaaaagaaaactccacaaaataat |
112 |
Q |
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| T |
3566925 |
gaagtgctacaacaatcaaaaccaacacctaattactctaattgggaattcagcttcggtaatatgctaaaggggaaaaaagaaaactccacaaaataat |
3566826 |
T |
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| Q |
113 |
tatgttaatctttcattatcatgcaggtaacaatgtggataagaaaatgcacttcacaagggtttttcctttgcaaaaaagagttataacaacaatttca |
212 |
Q |
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| T |
3566825 |
tatgttaatctttcattatcatgcaggtaacaatgtggataagaaaatgcacttcacaagggtttttcctttgcaaaaaagagttataacaacaatttca |
3566726 |
T |
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| Q |
213 |
tcaaatgcaaaaagttcaaaccatgttatattgagaggcaacatgctagcacagcaagattcgaagcgatagtgatataaaaa |
295 |
Q |
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| T |
3566725 |
tcaaatgcaaaaagttcaaaccatgttatattgagatgcaacatgctaggacagcaagattcgaagcgatagtgatataaaaa |
3566643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 3566590 - 3566621
Alignment:
| Q |
302 |
tgtttctatccaattgcatagccatagcatta |
333 |
Q |
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| T |
3566590 |
tgtttctatccaattgcatagccatagcatta |
3566621 |
T |
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