View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15736_high_27 (Length: 229)

Name: NF15736_high_27
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15736_high_27
NF15736_high_27
[»] chr3 (9 HSPs)
chr3 (18-212)||(52275179-52275372)
chr3 (18-65)||(49278678-49278725)
chr3 (25-65)||(17321919-17321960)
chr3 (25-65)||(25693299-25693339)
chr3 (18-65)||(16024843-16024890)
chr3 (18-65)||(28260029-28260076)
chr3 (18-65)||(53804597-53804644)
chr3 (18-67)||(27843043-27843092)
chr3 (18-55)||(51108005-51108042)
[»] chr5 (5 HSPs)
chr5 (18-71)||(7630656-7630709)
chr5 (34-65)||(7630350-7630381)
chr5 (18-65)||(38445670-38445717)
chr5 (36-65)||(26032250-26032279)
chr5 (18-66)||(42267565-42267613)
[»] chr2 (7 HSPs)
chr2 (18-65)||(17642436-17642483)
chr2 (18-65)||(1943886-1943933)
chr2 (18-65)||(24895771-24895818)
chr2 (26-67)||(8095029-8095070)
chr2 (18-67)||(12496892-12496941)
chr2 (18-71)||(17642638-17642691)
chr2 (37-65)||(12926753-12926781)
[»] chr1 (3 HSPs)
chr1 (18-65)||(9117510-9117557)
chr1 (36-65)||(362676-362705)
chr1 (33-65)||(47593237-47593269)
[»] chr4 (6 HSPs)
chr4 (18-67)||(40154676-40154725)
chr4 (18-65)||(5521542-5521589)
chr4 (18-65)||(31792626-31792673)
chr4 (18-68)||(15186854-15186904)
chr4 (36-65)||(2478937-2478966)
chr4 (37-65)||(51203223-51203251)
[»] scaffold0939 (1 HSPs)
scaffold0939 (27-65)||(754-792)
[»] chr7 (3 HSPs)
chr7 (20-65)||(30218751-30218796)
chr7 (36-65)||(33005190-33005219)
chr7 (18-67)||(39187731-39187780)
[»] chr6 (1 HSPs)
chr6 (27-63)||(1112065-1112101)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 52275179 - 52275372
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatcatttccaaaattgtcccttcgaatcataactctcggtcgctggttcgtga 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52275179 actaaactcaaaatctgttatatttatagg-acgaaaaacttatttaatcctttccaaaattgtcccttcgaatcataactttcggtcgctggttcgtga 52275277  T
Q  118 tttatgtcctaggaattatgcccaaataacttgtcaatacatacaaaaacataaatcgtcattcttctttcaaacttatttccttacattttacc 212  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52275278 tttatgccctatgaattatgcccaaataacttgtcaatacatacaaaaacataaatcgtcattcttctttcaaacttatttccttacattttacc 52275372  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 49278678 - 49278725
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  49278678 actaaaatcaaaatcagttatatatatagggacgaaaaacttatttaa 49278725  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 17321919 - 17321960
Alignment:
Q  25 tcaaaatctgttatatttatagggacg-aaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  17321919 tcaaaatctgttatatttatagggacgaaaaaacttatttaa 17321960  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 25693339 - 25693299
Alignment:
Q  25 tcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  25693339 tcaaaatatgttataattatagggacgaaaaacttatttaa 25693299  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 16024843 - 16024890
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||||    
T  16024843 actaaaatcaaaatttgatatatttatagggacgaataacttatttaa 16024890  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 28260029 - 28260076
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || ||||||| ||||||||||||||||||||||    
T  28260029 actaaaatcaaaatttgctatatttttagggacgaaaaacttatttaa 28260076  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 53804644 - 53804597
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || |||||||| |||||||||||||||||||||    
T  53804644 actaaaatcaaaatttgatatatttaaagggacgaaaaacttatttaa 53804597  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27843043 - 27843092
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| | ||||| || |||||||||||||||||||||| |||||||||    
T  27843043 actaaaataaaaatttgatatatttatagggacgaaaaacatatttaatc 27843092  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 51108005 - 51108042
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaa 55  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  51108005 actaaaatcaaaatctgttatatttatagggactaaaa 51108042  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7630656 - 7630709
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatcattt 71  Q
    |||||| ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  7630656 actaaaatcaaaatttgatatatttatagagacgaaaaacttatttaatcattt 7630709  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 7630381 - 7630350
Alignment:
Q  34 gttatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||||    
T  7630381 gttatatttatagggacgaaaaacttatttaa 7630350  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 38445717 - 38445670
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || || |||||||||||||||||||||||||||    
T  38445717 actaaaatcaaaatttgatacatttatagggacgaaaaacttatttaa 38445670  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 26032279 - 26032250
Alignment:
Q  36 tatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||    
T  26032279 tatatttatagggacgaaaaacttatttaa 26032250  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 42267613 - 42267565
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaat 66  Q
    |||||| ||||||| | ||||||||||| || |||||||||||||||||    
T  42267613 actaaaatcaaaatatattatatttataagggcgaaaaacttatttaat 42267565  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 17642483 - 17642436
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  17642483 actaaaatcaaaatctattatatttatagggatgaaaaacttatttaa 17642436  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 1943933 - 1943886
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| | ||||||| ||||||||||| |||||||||||||||||||    
T  1943933 actaaaattaaaatctattatatttataaggacgaaaaacttatttaa 1943886  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 24895771 - 24895818
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| |||||||||| || |||||||||||||||||||    
T  24895771 actaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaa 24895818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 8095029 - 8095070
Alignment:
Q  26 caaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| |||||||||||||||||| |||||| |||||||||    
T  8095029 caaaatttgttatatttatagggactaaaaacatatttaatc 8095070  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 12496892 - 12496941
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| |||||||  |||||||||||||||| |||||| ||||||||||    
T  12496892 actaaaatcaaaattcgttatatttatagggatgaaaaatttatttaatc 12496941  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 17642638 - 17642691
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatcattt 71  Q
    |||||| |||||||  | ||||||| |||||||||||||||||||||| |||||    
T  17642638 actaaaatcaaaattcgctatatttttagggacgaaaaacttatttaaccattt 17642691  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 12926753 - 12926781
Alignment:
Q  37 atatttatagggacgaaaaacttatttaa 65  Q
    |||||||||||||||||||||||||||||    
T  12926753 atatttatagggacgaaaaacttatttaa 12926781  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 9117510 - 9117557
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  9117510 actaaaatcaaaatttgttatatttatagggacaaaaaacttatttaa 9117557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 362705 - 362676
Alignment:
Q  36 tatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||    
T  362705 tatatttatagggacgaaaaacttatttaa 362676  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 47593269 - 47593237
Alignment:
Q  33 tgttatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||| |||||||    
T  47593269 tgttatatttatagggacgaaaaacgtatttaa 47593237  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 40154676 - 40154725
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| ||||| | || ||||||||||||||||||||||||||||||||    
T  40154676 actaaaatcaaattttgatatatttatagggacgaaaaacttatttaatc 40154725  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 5521542 - 5521589
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| |||||||  | ||||||||||||||||||||||||||||||    
T  5521542 actaaaatcaaaattcgctatatttatagggacgaaaaacttatttaa 5521589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 31792673 - 31792626
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || ||||||||||||||||||||| ||||||||    
T  31792673 actaaaatcaaaatttgatatatttatagggacgaaaaatttatttaa 31792626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 15186904 - 15186854
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatca 68  Q
    |||||| ||||| | || ||||||| |||||||||||||||||||||||||    
T  15186904 actaaaatcaaactttgatatatttttagggacgaaaaacttatttaatca 15186854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 2478966 - 2478937
Alignment:
Q  36 tatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||    
T  2478966 tatatttatagggacgaaaaacttatttaa 2478937  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 51203251 - 51203223
Alignment:
Q  37 atatttatagggacgaaaaacttatttaa 65  Q
    |||||||||||||||||||||||||||||    
T  51203251 atatttatagggacgaaaaacttatttaa 51203223  T

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Target: scaffold0939 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 754 - 792
Alignment:
Q  27 aaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  754 aaaatttgttatatttatagggacgaaaaatttatttaa 792  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 30218796 - 30218751
Alignment:
Q  20 taaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||| |||||||  |||||||||||| |||||||||||||||||||    
T  30218796 taaaatcaaaattcgttatatttatatggacgaaaaacttatttaa 30218751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 33005190 - 33005219
Alignment:
Q  36 tatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||    
T  33005190 tatatttatagggacgaaaaacttatttaa 33005219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 39187731 - 39187780
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| |||||||   ||||||||||||| |||||||||||||||||||    
T  39187731 actaaaatcaaaattcattatatttataggaacgaaaaacttatttaatc 39187780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 1112065 - 1112101
Alignment:
Q  27 aaaatctgttatatttatagggacgaaaaacttattt 63  Q
    ||||| || ||||||||||||||||||||||||||||    
T  1112065 aaaatatgatatatttatagggacgaaaaacttattt 1112101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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