View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_high_3 (Length: 564)
Name: NF15736_high_3
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 257 - 548
Target Start/End: Complemental strand, 17289246 - 17288955
Alignment:
| Q |
257 |
gcttgaacatcctagaacaccgaacttaacactatttagagtagttaagaaacctgcaattaagaaatatagttccttcctcagcgtaagcgcttgagaa |
356 |
Q |
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| T |
17289246 |
gcttgaacatcctagaacaccgaacttaacactatttagagtagttaagaaacctgcgactaaggaatatagttcctttctcagtgtaagcgcttgagaa |
17289147 |
T |
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| Q |
357 |
aaggaaatccttgtggagagctattagtcgatcctcgtgtaattttcaagttcaataacaaaattgaatgtttacatcatgtatttaaaaaatatttcta |
456 |
Q |
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| T |
17289146 |
aaggaaatccttgtggagagctattagtcgatcctcgtgtaattttcaagttcaataacaaaattggatgtttatatcatgtatttaaaaaatatttcta |
17289047 |
T |
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| Q |
457 |
tagccttacataaattattattttctggttaaatagtatagtgactataatataacttttaaggtggataaaagacaatataaggtttgaac |
548 |
Q |
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| T |
17289046 |
tagccttacataaattattattttgtggttaaatagtatagtgactataatataacttttaaggtggataaaaggcaatataaggttcgaac |
17288955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 17289488 - 17289320
Alignment:
| Q |
13 |
cagaatggaagactgaaagtcaaacgcggggcaccatatatcccttggcgggaagaattacgaattacctgcgtaaaatagccgagaaagactaatcact |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17289488 |
cagaatggaagactgaaagtcaaacgcggggcaccatatatcccttggcgggaagaattacgaa--acctgcgtaaaatagccgagaaagactaatcact |
17289391 |
T |
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| Q |
113 |
ataggcaacgtcatttttgctagtaagtttagacttatacattttatttgacatttacaatcaatgaacca |
183 |
Q |
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| T |
17289390 |
ataggcaacgtcatttttgctagtaagtttagacttatacattttatttgacatttacaatcaatgaacca |
17289320 |
T |
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