View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15736_low_1 (Length: 683)

Name: NF15736_low_1
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15736_low_1
NF15736_low_1
[»] chr3 (18 HSPs)
chr3 (294-523)||(52275445-52275672)
chr3 (18-221)||(52275179-52275381)
chr3 (549-674)||(52275665-52275790)
chr3 (549-674)||(54760449-54760573)
chr3 (18-65)||(49278678-49278725)
chr3 (25-65)||(17321919-17321960)
chr3 (25-65)||(25693299-25693339)
chr3 (18-65)||(16024843-16024890)
chr3 (18-65)||(28260029-28260076)
chr3 (18-65)||(53804597-53804644)
chr3 (493-523)||(26066968-26066998)
chr3 (494-523)||(12007168-12007197)
chr3 (549-674)||(26066851-26066975)
chr3 (18-67)||(27843043-27843092)
chr3 (549-674)||(42375082-42375206)
chr3 (549-674)||(42403796-42403920)
chr3 (18-55)||(51108005-51108042)
chr3 (494-523)||(54760427-54760456)
[»] chr4 (12 HSPs)
chr4 (549-674)||(54959919-54960043)
chr4 (18-67)||(40154676-40154725)
chr4 (18-65)||(5521542-5521589)
chr4 (18-65)||(31792626-31792673)
chr4 (492-523)||(36040821-36040852)
chr4 (18-68)||(15186854-15186904)
chr4 (493-523)||(54959896-54959926)
chr4 (36-65)||(2478937-2478966)
chr4 (549-674)||(36040704-36040828)
chr4 (494-523)||(37082652-37082681)
chr4 (394-454)||(44358604-44358664)
chr4 (37-65)||(51203223-51203251)
[»] chr6 (4 HSPs)
chr6 (549-674)||(5325887-5326011)
chr6 (494-523)||(30698610-30698639)
chr6 (27-63)||(1112065-1112101)
chr6 (610-674)||(18273102-18273166)
[»] chr1 (17 HSPs)
chr1 (341-488)||(29492315-29492462)
chr1 (299-488)||(13345892-13346079)
chr1 (18-65)||(9117510-9117557)
chr1 (549-674)||(46387904-46388028)
chr1 (355-433)||(29490312-29490390)
chr1 (493-523)||(50985593-50985623)
chr1 (36-65)||(362676-362705)
chr1 (549-674)||(4297232-4297356)
chr1 (549-674)||(7733578-7733702)
chr1 (494-523)||(11166965-11166994)
chr1 (549-674)||(37381572-37381696)
chr1 (610-674)||(7698918-7698982)
chr1 (495-523)||(7733695-7733723)
chr1 (610-674)||(11166848-11166912)
chr1 (610-674)||(41767889-41767953)
chr1 (495-523)||(46388021-46388049)
chr1 (33-65)||(47593237-47593269)
[»] chr7 (7 HSPs)
chr7 (614-674)||(22882978-22883038)
chr7 (494-523)||(29054697-29054726)
chr7 (20-65)||(30218751-30218796)
chr7 (36-65)||(33005190-33005219)
chr7 (494-523)||(34346808-34346837)
chr7 (18-67)||(39187731-39187780)
chr7 (494-523)||(46369677-46369706)
[»] chr5 (9 HSPs)
chr5 (18-71)||(7630656-7630709)
chr5 (34-65)||(7630350-7630381)
chr5 (18-65)||(38445670-38445717)
chr5 (634-668)||(125539-125573)
chr5 (493-523)||(125621-125651)
chr5 (494-523)||(20405098-20405127)
chr5 (494-523)||(20407705-20407734)
chr5 (36-65)||(26032250-26032279)
chr5 (18-66)||(42267565-42267613)
[»] chr2 (12 HSPs)
chr2 (549-605)||(1074238-1074293)
chr2 (18-65)||(17642436-17642483)
chr2 (610-674)||(29609046-29609110)
chr2 (18-65)||(1943886-1943933)
chr2 (492-523)||(13098271-13098302)
chr2 (18-65)||(24895771-24895818)
chr2 (493-523)||(29609163-29609193)
chr2 (26-67)||(8095029-8095070)
chr2 (18-67)||(12496892-12496941)
chr2 (549-674)||(13098295-13098419)
chr2 (18-71)||(17642638-17642691)
chr2 (37-65)||(12926753-12926781)
[»] chr8 (3 HSPs)
chr8 (549-674)||(44843213-44843337)
chr8 (631-674)||(37742062-37742105)
chr8 (494-523)||(44843330-44843359)
[»] scaffold0939 (1 HSPs)
scaffold0939 (27-65)||(754-792)
[»] scaffold2013 (1 HSPs)
scaffold2013 (494-523)||(722-751)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 294 - 523
Target Start/End: Original strand, 52275445 - 52275672
Alignment:
Q  294 gtacatgttcaaaatctataagcctacacattcattcacattttgtgtgttagggttttagaaagttgttaatatgattgtgagttagaaatatctttag 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52275445 gtacatgttcaaaatctataagcctacacattcattcacattttgtgtgttagggttttagaaagttgttaatatgattgtgagttagaaatatctttag 52275544  T
Q  394 ttatttggataattattgatcaattagaaagttgtttttactataaatgtagtttaaattatatattaatggaatgtgatagtctaaaaattgaattgaa 493  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  52275545 ttatttggataattattgatc-attagaaagttgtttttactataaatgtagtttaaattatatattaatgg-atgtggtagtctaaaaattgaattgaa 52275642  T
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  52275643 atctctcttaatataagaagagaagatgtt 52275672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 52275179 - 52275381
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatcatttccaaaattgtcccttcgaatcataactctcggtcgctggttcgtga 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52275179 actaaactcaaaatctgttatatttatagg-acgaaaaacttatttaatcctttccaaaattgtcccttcgaatcataactttcggtcgctggttcgtga 52275277  T
Q  118 tttatgtcctaggaattatgcccaaataacttgtcaatacatacaaaaacataaatcgtcattcttctttcaaacttatttccttacattttacctcacc 217  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52275278 tttatgccctatgaattatgcccaaataacttgtcaatacatacaaaaacataaatcgtcattcttctttcaaacttatttccttacattttacctcacc 52275377  T
Q  218 actc 221  Q
    ||||    
T  52275378 actc 52275381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 549 - 674
Target Start/End: Original strand, 52275665 - 52275790
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52275665 aagatgttgtggaaaacctattattaccccaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 52275764  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    ||||||||||||||||||||||||||    
T  52275765 tgaccacaattaactatgatgatgtc 52275790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 549 - 674
Target Start/End: Original strand, 54760449 - 54760573
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    |||||||||||||||| |||||||||||||| || |||||| ||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  54760449 aagatgttgtggaaaatctattattaccctatgccggttgg-ttgacaaatcacataattgagggtaaaagttgtcctaaaattactttattgaactaaa 54760547  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    |||||| || |||||| |||||||||    
T  54760548 tgaccataactaactacgatgatgtc 54760573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 49278678 - 49278725
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  49278678 actaaaatcaaaatcagttatatatatagggacgaaaaacttatttaa 49278725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 17321919 - 17321960
Alignment:
Q  25 tcaaaatctgttatatttatagggacg-aaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  17321919 tcaaaatctgttatatttatagggacgaaaaaacttatttaa 17321960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 25693339 - 25693299
Alignment:
Q  25 tcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  25693339 tcaaaatatgttataattatagggacgaaaaacttatttaa 25693299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 16024843 - 16024890
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||||    
T  16024843 actaaaatcaaaatttgatatatttatagggacgaataacttatttaa 16024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 28260029 - 28260076
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || ||||||| ||||||||||||||||||||||    
T  28260029 actaaaatcaaaatttgctatatttttagggacgaaaaacttatttaa 28260076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 53804644 - 53804597
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || |||||||| |||||||||||||||||||||    
T  53804644 actaaaatcaaaatttgatatatttaaagggacgaaaaacttatttaa 53804597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 523
Target Start/End: Complemental strand, 26066998 - 26066968
Alignment:
Q  493 aatctctcttaatataagaagagaagatgtt 523  Q
    |||||||||||||||||||||||||||||||    
T  26066998 aatctctcttaatataagaagagaagatgtt 26066968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Original strand, 12007168 - 12007197
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  12007168 atctctcttaatataagaagagaagatgtt 12007197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 26066975 - 26066851
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  26066975 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 26066877  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  26066876 ttaccacaattaactaagatgatgtc 26066851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27843043 - 27843092
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| | ||||| || |||||||||||||||||||||| |||||||||    
T  27843043 actaaaataaaaatttgatatatttatagggacgaaaaacatatttaatc 27843092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 42375206 - 42375082
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  42375206 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 42375108  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  42375107 ttaccacaattaactaagatgatgtc 42375082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 42403920 - 42403796
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  42403920 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 42403822  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  42403821 ttaccacaattaactaagatgatgtc 42403796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 51108005 - 51108042
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaa 55  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  51108005 actaaaatcaaaatctgttatatttatagggactaaaa 51108042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Original strand, 54760427 - 54760456
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  54760427 atctctcttaatataagaagagaagatgtt 54760456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 549 - 674
Target Start/End: Original strand, 54959919 - 54960043
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    |||||||||||||||| ||||||||| ||||| || |  |||||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  54959919 aagatgttgtggaaaatctattattatcctaa-cttgagggcttgtcaaatcacacaattgaaggtaaaagttgtctaaaaattactttattgtactaaa 54960017  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    ||||||||||||||||||||||||||    
T  54960018 tgaccacaattaactatgatgatgtc 54960043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 40154676 - 40154725
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| ||||| | || ||||||||||||||||||||||||||||||||    
T  40154676 actaaaatcaaattttgatatatttatagggacgaaaaacttatttaatc 40154725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 5521542 - 5521589
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| |||||||  | ||||||||||||||||||||||||||||||    
T  5521542 actaaaatcaaaattcgctatatttatagggacgaaaaacttatttaa 5521589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 31792673 - 31792626
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || ||||||||||||||||||||| ||||||||    
T  31792673 actaaaatcaaaatttgatatatttatagggacgaaaaatttatttaa 31792626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 523
Target Start/End: Complemental strand, 36040852 - 36040821
Alignment:
Q  492 aaatctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||||    
T  36040852 aaatctctcttaatataagaagagaagatgtt 36040821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 15186904 - 15186854
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatca 68  Q
    |||||| ||||| | || ||||||| |||||||||||||||||||||||||    
T  15186904 actaaaatcaaactttgatatatttttagggacgaaaaacttatttaatca 15186854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 523
Target Start/End: Original strand, 54959896 - 54959926
Alignment:
Q  493 aatctctcttaatataagaagagaagatgtt 523  Q
    |||||||||||||||||||||||||||||||    
T  54959896 aatctctcttaatataagaagagaagatgtt 54959926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 2478966 - 2478937
Alignment:
Q  36 tatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||    
T  2478966 tatatttatagggacgaaaaacttatttaa 2478937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 36040828 - 36040704
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  36040828 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 36040730  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  36040729 ttaccacaattaactaagatgatgtc 36040704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Original strand, 37082652 - 37082681
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  37082652 atctctcttaatataagaagagaagatgtt 37082681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 44358664 - 44358604
Alignment:
Q  394 ttatttggataattattgatcaattagaaagttgtttttactataaatgtagtttaaatta 454  Q
    |||||||| ||||| |||||||||||||  |||||||||| ||| ||||| | ||||||||    
T  44358664 ttatttgggtaattgttgatcaattagacggttgtttttaatatgaatgtggcttaaatta 44358604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 51203251 - 51203223
Alignment:
Q  37 atatttatagggacgaaaaacttatttaa 65  Q
    |||||||||||||||||||||||||||||    
T  51203251 atatttatagggacgaaaaacttatttaa 51203223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 549 - 674
Target Start/End: Original strand, 5325887 - 5326011
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    |||||||||||||||| |||||||||||||| || |||||| ||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  5325887 aagatgttgtggaaaatctattattaccctatgccggttgg-ttgacaaatcacataattgagggtaaaagttgtcctaaaattactttattgaactaaa 5325985  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    |||||| || |||||| |||||||||    
T  5325986 tgaccataactaactacgatgatgtc 5326011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 30698639 - 30698610
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  30698639 atctctcttaatataagaagagaagatgtt 30698610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 1112065 - 1112101
Alignment:
Q  27 aaaatctgttatatttatagggacgaaaaacttattt 63  Q
    ||||| || ||||||||||||||||||||||||||||    
T  1112065 aaaatatgatatatttatagggacgaaaaacttattt 1112101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 674
Target Start/End: Complemental strand, 18273166 - 18273102
Alignment:
Q  610 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 674  Q
    |||||||||  |||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  18273166 agggtaaaatctgtctttaatttactttattcaaccaaattaccacaattaactaagatgatgtc 18273102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 341 - 488
Target Start/End: Complemental strand, 29492462 - 29492315
Alignment:
Q  341 tgttagggttttagaaagttgttaatatgattgtgagttagaaatatctttagttatttggataattattgatcaattagaaagttgtttttactataaa 440  Q
    |||||| ||||| |||| | |||||||||||||||| || ||||||||||| |||||||||| |||| |||||||||||||| || ||||||||  | ||    
T  29492462 tgttagagtttttgaaattggttaatatgattgtgaattggaaatatctttggttatttggacaattgttgatcaattagaatgtagtttttaccgtgaa 29492363  T
Q  441 tgtagtttaaattatatattaatggaatgtgatagtctaaaaattgaa 488  Q
    |||||||||| ||| | |||| || |||||  |||  |||||||||||    
T  29492362 tgtagtttaagttaaacattattgcaatgtattagcataaaaattgaa 29492315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 488
Target Start/End: Complemental strand, 13346079 - 13345892
Alignment:
Q  299 tgttcaaaatctataagcctacacattcattcacattttgtgtgttagggttttagaaagttgttaa-tatgattgtgagttagaaatatctttagttat 397  Q
    |||||||||||||  || || ||||||| |||||||||| | |||||||  ||| ||| |||||||| ||||||||||| || |||   | |||||||||    
T  13346079 tgttcaaaatcta--agtctgcacattccttcacattttatatgttaggaattttgaa-gttgttaaatatgattgtgaatttgaatgttgtttagttat 13345983  T
Q  398 ttggataattattgatcaattagaaagttgtttttactataaatgtagtttaaattatatattaatggaatgtgatagtctaaaaattgaa 488  Q
    || | || || ||| |||||||||| |||  ||||||||||||||||||||||| ||  ||||| || ||| || |||| ||| |||||||    
T  13345982 ttaggtacttgttggtcaattagaaggtttattttactataaatgtagtttaaaataagtattagtgcaatttggtagtataagaattgaa 13345892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 9117510 - 9117557
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  9117510 actaaaatcaaaatttgttatatttatagggacaaaaaacttatttaa 9117557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 46388028 - 46387904
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | ||||||||| ||||||  || |||||||||| ||| |||    
T  46388028 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaaccaaa 46387930  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  46387929 ttaccacaattaactaagatgatgtc 46387904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 433
Target Start/End: Original strand, 29490312 - 29490390
Alignment:
Q  355 aaagttgttaatatgattgtgagttagaaatatctttagttatttggataattattgatcaattagaaagttgttttta 433  Q
    ||||| |||||||||||||||| ||| ||||||| || ||||||| || |||  |||||| ||||||| || |||||||    
T  29490312 aaagtggttaatatgattgtgaattaaaaatatccttggttatttagacaatcgttgatcgattagaatgtagttttta 29490390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 523
Target Start/End: Original strand, 50985593 - 50985623
Alignment:
Q  493 aatctctcttaatataagaagagaagatgtt 523  Q
    |||||||||||||||||||||||||||||||    
T  50985593 aatctctcttaatataagaagagaagatgtt 50985623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 362705 - 362676
Alignment:
Q  36 tatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||    
T  362705 tatatttatagggacgaaaaacttatttaa 362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 4297356 - 4297232
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  4297356 aagatgttgtggaaatcctattaatgccccagtctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 4297258  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  4297257 ttaccacaattaactaagatgatgtc 4297232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 7733702 - 7733578
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  7733702 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 7733604  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  7733603 ttaccacaattaactaagatgatgtc 7733578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 11166994 - 11166965
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  11166994 atctctcttaatataagaagagaagatgtt 11166965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 674
Target Start/End: Original strand, 37381572 - 37381696
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  37381572 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 37381670  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  37381671 ttaccacaattaactaagatgatgtc 37381696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 674
Target Start/End: Original strand, 7698918 - 7698982
Alignment:
Q  610 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 674  Q
    |||||||||  |||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  7698918 agggtaaaatctgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtc 7698982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 523
Target Start/End: Complemental strand, 7733723 - 7733695
Alignment:
Q  495 tctctcttaatataagaagagaagatgtt 523  Q
    |||||||||||||||||||||||||||||    
T  7733723 tctctcttaatataagaagagaagatgtt 7733695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 674
Target Start/End: Complemental strand, 11166912 - 11166848
Alignment:
Q  610 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 674  Q
    |||||||||  |||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  11166912 agggtaaaatctgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtc 11166848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 674
Target Start/End: Original strand, 41767889 - 41767953
Alignment:
Q  610 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 674  Q
    |||||||||  |||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  41767889 agggtaaaatctgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtc 41767953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 523
Target Start/End: Complemental strand, 46388049 - 46388021
Alignment:
Q  495 tctctcttaatataagaagagaagatgtt 523  Q
    |||||||||||||||||||||||||||||    
T  46388049 tctctcttaatataagaagagaagatgtt 46388021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 47593269 - 47593237
Alignment:
Q  33 tgttatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||| |||||||    
T  47593269 tgttatatttatagggacgaaaaacgtatttaa 47593237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 614 - 674
Target Start/End: Complemental strand, 22883038 - 22882978
Alignment:
Q  614 taaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 674  Q
    |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22883038 taaaagttatttaaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 22882978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 29054726 - 29054697
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  29054726 atctctcttaatataagaagagaagatgtt 29054697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 30218796 - 30218751
Alignment:
Q  20 taaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||| |||||||  |||||||||||| |||||||||||||||||||    
T  30218796 taaaatcaaaattcgttatatttatatggacgaaaaacttatttaa 30218751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 33005190 - 33005219
Alignment:
Q  36 tatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||    
T  33005190 tatatttatagggacgaaaaacttatttaa 33005219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 34346837 - 34346808
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  34346837 atctctcttaatataagaagagaagatgtt 34346808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 39187731 - 39187780
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| |||||||   ||||||||||||| |||||||||||||||||||    
T  39187731 actaaaatcaaaattcattatatttataggaacgaaaaacttatttaatc 39187780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 46369706 - 46369677
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  46369706 atctctcttaatataagaagagaagatgtt 46369677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7630656 - 7630709
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatcattt 71  Q
    |||||| ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  7630656 actaaaatcaaaatttgatatatttatagagacgaaaaacttatttaatcattt 7630709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 7630381 - 7630350
Alignment:
Q  34 gttatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||||    
T  7630381 gttatatttatagggacgaaaaacttatttaa 7630350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 38445717 - 38445670
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| || || |||||||||||||||||||||||||||    
T  38445717 actaaaatcaaaatttgatacatttatagggacgaaaaacttatttaa 38445670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 668
Target Start/End: Complemental strand, 125573 - 125539
Alignment:
Q  634 ctttattgaactaaatgaccacaattaactatgat 668  Q
    ||||||||||||||||||||| |||||||||||||    
T  125573 ctttattgaactaaatgaccataattaactatgat 125539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 523
Target Start/End: Complemental strand, 125651 - 125621
Alignment:
Q  493 aatctctcttaatataagaagagaagatgtt 523  Q
    |||||||||||||||||||||||||||||||    
T  125651 aatctctcttaatataagaagagaagatgtt 125621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 20405127 - 20405098
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  20405127 atctctcttaatataagaagagaagatgtt 20405098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 20407734 - 20407705
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  20407734 atctctcttaatataagaagagaagatgtt 20407705  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 26032279 - 26032250
Alignment:
Q  36 tatatttatagggacgaaaaacttatttaa 65  Q
    ||||||||||||||||||||||||||||||    
T  26032279 tatatttatagggacgaaaaacttatttaa 26032250  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 42267613 - 42267565
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaat 66  Q
    |||||| ||||||| | ||||||||||| || |||||||||||||||||    
T  42267613 actaaaatcaaaatatattatatttataagggcgaaaaacttatttaat 42267565  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 605
Target Start/End: Original strand, 1074238 - 1074293
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacaca 605  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||    
T  1074238 aagatgttgtggaaaatctattattaccctatgctggttgg-ttgacaaatcacaca 1074293  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 17642483 - 17642436
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  17642483 actaaaatcaaaatctattatatttatagggatgaaaaacttatttaa 17642436  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 674
Target Start/End: Complemental strand, 29609110 - 29609046
Alignment:
Q  610 agggtaaaagttgtctgaaaattactttattgaactaaatgaccacaattaactatgatgatgtc 674  Q
    ||||||||| ||||||  || |||||||||| ||| |||| |||||||||||||| |||||||||    
T  29609110 agggtaaaatttgtctttaacttactttattcaaccaaattaccacaattaactaagatgatgtc 29609046  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 1943933 - 1943886
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| | ||||||| ||||||||||| |||||||||||||||||||    
T  1943933 actaaaattaaaatctattatatttataaggacgaaaaacttatttaa 1943886  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 523
Target Start/End: Original strand, 13098271 - 13098302
Alignment:
Q  492 aaatctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||||    
T  13098271 aaatctctcttaatataagaagagaagatgtt 13098302  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 24895771 - 24895818
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    |||||| ||||||| |||||||||| || |||||||||||||||||||    
T  24895771 actaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaa 24895818  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 523
Target Start/End: Complemental strand, 29609193 - 29609163
Alignment:
Q  493 aatctctcttaatataagaagagaagatgtt 523  Q
    |||||||||||||||||||||||||||||||    
T  29609193 aatctctcttaatataagaagagaagatgtt 29609163  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 8095029 - 8095070
Alignment:
Q  26 caaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| |||||||||||||||||| |||||| |||||||||    
T  8095029 caaaatttgttatatttatagggactaaaaacatatttaatc 8095070  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 12496892 - 12496941
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatc 67  Q
    |||||| |||||||  |||||||||||||||| |||||| ||||||||||    
T  12496892 actaaaatcaaaattcgttatatttatagggatgaaaaatttatttaatc 12496941  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 674
Target Start/End: Original strand, 13098295 - 13098419
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| |  ||||||   ||| ||||||||  || | |||||||||  |||||  || |||||||||| ||| |||    
T  13098295 aagatgttgtggaaatcctattaatgccccagcctggttaa-ttgacaaatcaccaaagtaagggtaaaatctgtctttaacttactttattcaaccaaa 13098393  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | |||||||||||||| |||||||||    
T  13098394 ttaccacaattaactaagatgatgtc 13098419  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 17642638 - 17642691
Alignment:
Q  18 actaaactcaaaatctgttatatttatagggacgaaaaacttatttaatcattt 71  Q
    |||||| |||||||  | ||||||| |||||||||||||||||||||| |||||    
T  17642638 actaaaatcaaaattcgctatatttttagggacgaaaaacttatttaaccattt 17642691  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 12926753 - 12926781
Alignment:
Q  37 atatttatagggacgaaaaacttatttaa 65  Q
    |||||||||||||||||||||||||||||    
T  12926753 atatttatagggacgaaaaacttatttaa 12926781  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 44843337 - 44843213
Alignment:
Q  549 aagatgttgtggaaaacctattattaccctaagctggttggcttgccaaatcacacaattgagggtaaaagttgtctgaaaattactttattgaactaaa 648  Q
    ||||||||||||||| ||||||| | ||| || ||||||   ||| ||||||||  || | ||||||||| ||||||  || |||||||||| ||| |||    
T  44843337 aagatgttgtggaaatcctattaatgccccaacctggttaa-ttgacaaatcaccaaagtaagggtaaaatttgtctttaacttactttattcaaccaaa 44843239  T
Q  649 tgaccacaattaactatgatgatgtc 674  Q
    | || ||||||||||| |||||||||    
T  44843238 ttacaacaattaactaagatgatgtc 44843213  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 674
Target Start/End: Original strand, 37742062 - 37742105
Alignment:
Q  631 ttactttattgaactaaatgaccacaattaactatgatgatgtc 674  Q
    |||||||||| |||||||| |||||||||||||| |||||||||    
T  37742062 ttactttattcaactaaattaccacaattaactaagatgatgtc 37742105  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 44843359 - 44843330
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  44843359 atctctcttaatataagaagagaagatgtt 44843330  T

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Target: scaffold0939 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 754 - 792
Alignment:
Q  27 aaaatctgttatatttatagggacgaaaaacttatttaa 65  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  754 aaaatttgttatatttatagggacgaaaaatttatttaa 792  T

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Target: scaffold2013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Original strand, 722 - 751
Alignment:
Q  494 atctctcttaatataagaagagaagatgtt 523  Q
    ||||||||||||||||||||||||||||||    
T  722 atctctcttaatataagaagagaagatgtt 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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