View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15736_low_12 (Length: 333)

Name: NF15736_low_12
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15736_low_12
NF15736_low_12
[»] chr8 (4 HSPs)
chr8 (54-316)||(42700095-42700357)
chr8 (63-175)||(42694591-42694703)
chr8 (8-56)||(42700381-42700429)
chr8 (272-312)||(42694421-42694461)
[»] chr5 (2 HSPs)
chr5 (84-138)||(8837517-8837571)
chr5 (254-307)||(8837759-8837812)
[»] chr1 (5 HSPs)
chr1 (61-152)||(23682654-23682744)
chr1 (266-307)||(44004751-44004792)
chr1 (259-307)||(43983343-43983391)
chr1 (257-307)||(43986150-43986200)
chr1 (257-298)||(43990932-43990973)
[»] chr4 (1 HSPs)
chr4 (93-138)||(45088733-45088778)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 54 - 316
Target Start/End: Complemental strand, 42700357 - 42700095
Alignment:
Q  54 aaaaaatatcatgtaagtaatatttggaagacaacacaaatatgatttaccattgcggcgatagcagactctcatgctaaatatgcatctcctgtccaag 153  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42700357 aaaaaaaatcatgtaagtaatatttggaagacaacacaaatatgatttaccattgcggcgatagcagactctcatgctaaatatgcatctcctgtccaag 42700258  T
Q  154 tttgcccaaaatactaggataatcaagttcggaactagtcttaattttaaccataactgcattttccgaaatgaacaaggggtcaaccaaactataactc 253  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42700257 tttgcccaaaatactaggataattaagttcggaactagtcttaattttaaccaaaactgcattttccgaaatgaacaaggggtcaaccaaactataactc 42700158  T
Q  254 aacaacttctcatgaggaatgaacatcaatttagtccatgactcagcaactccagattgtttc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42700157 aacaacttctcatgaggaatgaacatcaatttagtccatgactcagcaactccatattgtttc 42700095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 42694703 - 42694591
Alignment:
Q  63 catgtaagtaatatttggaagacaacacaaatatgatttaccattgcggcgatagcagactctcatgctaaatatgcatctcctgtccaagtttgcccaa 162  Q
    ||||||| ||| |||||||||||  | || ||||||||||||||||||| |||| |||||||||||| ||||||||||||||| | ||||||||||||||    
T  42694703 catgtaaataaaatttggaagaccccgcagatatgatttaccattgcggtgataccagactctcatggtaaatatgcatctcccgcccaagtttgcccaa 42694604  T
Q  163 aatactaggataa 175  Q
    |||  ||||||||    
T  42694603 aatcttaggataa 42694591  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 42700429 - 42700381
Alignment:
Q  8 agattatactttcaccaaaacaactcataccacatatttacgcattaaa 56  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  42700429 agattagactttcaccaaaacaactcataaaacatatttacgcattaaa 42700381  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 42694461 - 42694421
Alignment:
Q  272 atgaacatcaatttagtccatgactcagcaactccagattg 312  Q
    |||| ||||||||||||||||||||||| ||||||| ||||    
T  42694461 atgatcatcaatttagtccatgactcagtaactccatattg 42694421  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 8837517 - 8837571
Alignment:
Q  84 acaacacaaatatgatttaccattgcggcgatagcagactctcatgctaaatatg 138  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| || |||||    
T  8837517 acaatacaaatatgatttagcattgcggcgatagcagactctcatggtagatatg 8837571  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 8837759 - 8837812
Alignment:
Q  254 aacaacttctcatgaggaatgaacatcaatttagtccatgactcagcaactcca 307  Q
    ||||| || |||||||| ||| |||||||||| ||||||||||| |||||||||    
T  8837759 aacaagttttcatgagggatggacatcaattttgtccatgactcggcaactcca 8837812  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 23682744 - 23682654
Alignment:
Q  61 atcatgtaagtaatatttggaagacaacacaaatatgatttaccattgcggcgatagcagactctcatgctaaatatgcatctcctgtccaa 152  Q
    |||||| || ||| |||||||||||  || |||| |||||||||||||| || ||| ||| |||||||| ||||||||||||||| ||||||    
T  23682744 atcatgcaactaaaatttggaagactccagaaatgtgatttaccattgcagcaataccag-ctctcatggtaaatatgcatctcccgtccaa 23682654  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 44004751 - 44004792
Alignment:
Q  266 tgaggaatgaacatcaatttagtccatgactcagcaactcca 307  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  44004751 tgagggatgatcatcaatttagtccatgactcagcaactcca 44004792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 43983343 - 43983391
Alignment:
Q  259 cttctcatgaggaatgaacatcaatttagtccatgactcagcaactcca 307  Q
    |||||||||||| |||| ||| |||||||||||||||||| ||||||||    
T  43983343 cttctcatgagggatgatcatgaatttagtccatgactcaacaactcca 43983391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 43986150 - 43986200
Alignment:
Q  257 aacttctcatgaggaatgaacatcaatttagtccatgactcagcaactcca 307  Q
    |||| ||||||||| || | |||||||||||||||||||||| ||||||||    
T  43986150 aactcctcatgagggataatcatcaatttagtccatgactcaacaactcca 43986200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 43990932 - 43990973
Alignment:
Q  257 aacttctcatgaggaatgaacatcaatttagtccatgactca 298  Q
    |||||||||| ||| |||| ||||||||||||||||||||||    
T  43990932 aacttctcataagggatgatcatcaatttagtccatgactca 43990973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 45088733 - 45088778
Alignment:
Q  93 atatgatttaccattgcggcgatagcagactctcatgctaaatatg 138  Q
    ||||||||||||||||||| |||| ||||||||| || ||||||||    
T  45088733 atatgatttaccattgcggtgataccagactctcgtgataaatatg 45088778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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