View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_15 (Length: 293)
Name: NF15736_low_15
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_15 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 5660 - 5403
Alignment:
| Q |
21 |
tctatctaattcctcaacatagtatctacttgaaatatgagttccatcaaaatcctctccacaactacaatacatgcatcaaatcataatctttctgact |
120 |
Q |
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| T |
5660 |
tctatctaattcctcaacatagtatctacttgaaatatgagttccatcaaaatcctctccacaactacaatacatgcatcaaatcataatctttctgact |
5561 |
T |
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| Q |
121 |
caacttatcatacaatccatctaaccccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattaga |
220 |
Q |
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| T |
5560 |
caacttatcatacaatccatctaaccccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattaga |
5461 |
T |
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| Q |
221 |
tagaacaaatcaaatccaacaccttaaagactctctttcttctacccttgatattttt |
278 |
Q |
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| T |
5460 |
tagaacaaatcaaatccaacaccttaaagactctctttcttctacccttgatattttt |
5403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 56 - 271
Target Start/End: Original strand, 15743900 - 15744118
Alignment:
| Q |
56 |
tatgagttccatcaaaatcctctccacaactacaatacatgcatcaaatcataatctttctgactcaacttatca---tacaatccatctaaccccatgg |
152 |
Q |
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| T |
15743900 |
tatgagttcaatccaagtcctctccaccactccggtccatgcaccaaatcacaatccttgtgacccaaattatcatcatacaatcgatttaacaccatgg |
15743999 |
T |
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| Q |
153 |
gatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattagatagaacaaatcaaatccaacaccttaaagact |
252 |
Q |
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| T |
15744000 |
gatctacaattcctcccatttggagtcaaccaaaagggccttatttatcatcatccttccaacttagacacatcaaatcaaatcgaacaccttaaacact |
15744099 |
T |
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| Q |
253 |
ctctttcttctacccttga |
271 |
Q |
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| T |
15744100 |
ctctttcatccacccttga |
15744118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 15190176 - 15190268
Alignment:
| Q |
116 |
tgactcaacttatcatacaatccatctaaccccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcc |
208 |
Q |
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| T |
15190176 |
tgactcaactgatcgtataattcatttaaccccatgggatcttcaattcctcccatttggatccaaccaaaaggggtttctttatcaccatcc |
15190268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 11970034 - 11969966
Alignment:
| Q |
134 |
aatccatctaaccccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatca |
202 |
Q |
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| T |
11970034 |
aatccatttgaccccatgggatctccaattcctcccctttggagccaatcaaaaaggccttctttatca |
11969966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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