View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_17 (Length: 277)
Name: NF15736_low_17
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_17 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 44087923 - 44088177
Alignment:
| Q |
11 |
taattctgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtaattct |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44087923 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
44088022 |
T |
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| Q |
111 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattgaatcattcaaagaaagtgagatgatgtatagtggagaagacttgaaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44088023 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattgaatcattcaaagaaagtgagatgatgtatagtggagaagacttgaaat |
44088122 |
T |
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| Q |
211 |
gatgactttggtgaaagcatgatgattgatggtgataattgaagtctataaagatagcgaaa |
272 |
Q |
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| T |
44088123 |
gatgactttggtgaaagca-------tgatggtgataattgaaatctataaagatagagaaa |
44088177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 44067186 - 44066932
Alignment:
| Q |
11 |
taattctgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtaattct |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44067186 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttcagatgcagttaaattttctgttggtaattttttggctggtgattct |
44067087 |
T |
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| Q |
111 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattgaatcattcaaagaaagtgagatgatgtatagtggagaagacttgaaat |
210 |
Q |
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| T |
44067086 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattgaatcattcaaagaaagtgagatgatgtatagtggagaagacttgaaat |
44066987 |
T |
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| Q |
211 |
gatgactttggtgaaagcatgatgattgatggtgataattgaagtctataaagatagcgaaa |
272 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |
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| T |
44066986 |
gatgactttggtgaaagcat-------gatggtgataattgaaatctataaagatagagaaa |
44066932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 44092687 - 44092537
Alignment:
| Q |
11 |
taattctgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtaattct |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44092687 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
44092588 |
T |
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| Q |
111 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
161 |
Q |
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| T |
44092587 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
44092537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 7224 - 7374
Alignment:
| Q |
11 |
taattctgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtaattct |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7224 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
7323 |
T |
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| Q |
111 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
161 |
Q |
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| T |
7324 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
7374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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