View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_2 (Length: 572)
Name: NF15736_low_2
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 248 - 557
Target Start/End: Complemental strand, 44883806 - 44883503
Alignment:
| Q |
248 |
cgatgatcgaaagcctcctttgccatcgctcattgttcaaccaaggaccaccggagctagccttggtttgccttctccagattcactagcaaggtaatat |
347 |
Q |
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| T |
44883806 |
cgatgatcgaaagcctcctttgccgtcgctcattgttcaaccaaggaccaccggagctagccttggtttgccttctccagattcactagcaaggtaatat |
44883707 |
T |
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| Q |
348 |
tcaactatcataaatctattctattatgcaaatttttatttgtttaatttaattttgtaaggcagtgtcatataaagtttattcaagtagtttcttgtaa |
447 |
Q |
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| T |
44883706 |
tcaactatcataaatctattcta-tatgcaaatttttatttgtttaatttaattttgtaaggcagtgtcatataaagtttattcaagtagtttcttgtaa |
44883608 |
T |
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| Q |
448 |
atatatatttccacatgttgacgttgttatttgatagattatgatttttggtttatgtgaaaagtgatagcagtattgcatctgcatgtgtggacaacaa |
547 |
Q |
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| T |
44883607 |
----atatttccacattttgatgttgttatttgataga-tatgatttttggtttatgtgaaaagtgatagcagtgttgcatctgcatgtgtggacaacaa |
44883513 |
T |
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| Q |
548 |
agatacaact |
557 |
Q |
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|||||||||| |
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| T |
44883512 |
agatacaact |
44883503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 44884087 - 44883844
Alignment:
| Q |
12 |
aataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtggaggaggaggaggagaagaacatgtttaattattcaattgctaatc |
111 |
Q |
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| T |
44884087 |
aataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtggaggaggaggaggagaagaacatgtttaattattcaattgctaatc |
44883988 |
T |
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| Q |
112 |
ttcgagttcgtgttgatcatgacgatgatggtagcggggcgaagcaagagcagaggcttaggatggaacaacagcatgataacaactttgataatgtga- |
210 |
Q |
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| T |
44883987 |
ttcgagttcgtgttgatcatgacgatgatggtagcggggtgaagcaagagcagaggcttaggatggaacaacagcatgaaaacaactttgataatgtgaa |
44883888 |
T |
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| Q |
211 |
--agcaaaacgatccttttcttgaatcttcttattgtcacgatg |
252 |
Q |
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| T |
44883887 |
gcagcaaaacgatccttttcttgaatcttcttattgtcacgatg |
44883844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 9007176 - 9007334
Alignment:
| Q |
14 |
taataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga------------ggaggaggaggagaagaacatgtttaattattca |
101 |
Q |
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| T |
9007176 |
taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtggatgatgatgatgaggaggaagaggaggagaacatgtttaattattca |
9007275 |
T |
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| Q |
102 |
attgctaatc---------ttcgagttcgtgttgatcatgacgatgatggtagcggggc |
151 |
Q |
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| T |
9007276 |
gttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
9007334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 8994479 - 8994574
Alignment:
| Q |
65 |
ggaggaggaggaggagaagaacatgtttaattattcaattgctaatc---------ttcgagttcgtgttgatcatgacgatgatggtagcggggc |
151 |
Q |
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| T |
8994479 |
ggaggaagaggaggaggagaacatgtttaattattcagttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
8994574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 9029136 - 9029231
Alignment:
| Q |
65 |
ggaggaggaggaggagaagaacatgtttaattattcaattgctaatc---------ttcgagttcgtgttgatcatgacgatgatggtagcggggc |
151 |
Q |
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| T |
9029136 |
ggaggaagaggaggaggagaacatgtttaattaatcagttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
9029231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 8994410 - 8994463
Alignment:
| Q |
14 |
taataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
67 |
Q |
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| T |
8994410 |
taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
8994463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 9029067 - 9029120
Alignment:
| Q |
14 |
taataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
67 |
Q |
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| T |
9029067 |
taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
9029120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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