View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15736_low_22 (Length: 258)

Name: NF15736_low_22
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15736_low_22
NF15736_low_22
[»] chr3 (4 HSPs)
chr3 (77-242)||(33454882-33455046)
chr3 (147-196)||(44868068-44868117)
chr3 (147-196)||(47737649-47737698)
chr3 (147-196)||(50675101-50675150)
[»] chr7 (2 HSPs)
chr7 (77-197)||(29060068-29060188)
chr7 (147-196)||(27855626-27855675)
[»] chr1 (1 HSPs)
chr1 (77-197)||(48834426-48834546)
[»] chr8 (1 HSPs)
chr8 (147-196)||(7818535-7818584)
[»] chr6 (1 HSPs)
chr6 (147-196)||(13936616-13936665)
[»] chr4 (1 HSPs)
chr4 (147-196)||(37567450-37567499)
[»] chr2 (1 HSPs)
chr2 (147-196)||(10883348-10883397)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 33455046 - 33454882
Alignment:
Q  77 ttcattgaaagtgaaagtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttgagagtgcatgataacaac 176  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  33455046 ttcattgaaattgagagtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatatagtgttgagagtgcatgataacaat 33454947  T
Q  177 gtgttctttacttaatctaaccgttnnnnnnnnnctttcccatggtaggaaacaattttcctttcc 242  Q
    |||||||||||||||||||||||||         ||||| |||||| |||||||||||||||||||    
T  33454946 gtgttctttacttaatctaaccgtt-aaaaaaaactttctcatggtgggaaacaattttcctttcc 33454882  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 44868117 - 44868068
Alignment:
Q  147 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 196  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  44868117 aatctagtgttgagagagcatgttaagaatatgttctttacttaatctaa 44868068  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 47737649 - 47737698
Alignment:
Q  147 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 196  Q
    |||||||||||||||| ||||||||| ||  ||||||| |||||||||||    
T  47737649 aatctagtgttgagagagcatgataagaatatgttcttcacttaatctaa 47737698  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 50675101 - 50675150
Alignment:
Q  147 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 196  Q
    |||||||||||||||||||||| ||| ||  ||||||| |||||||||||    
T  50675101 aatctagtgttgagagtgcatgttaataatatgttcttcacttaatctaa 50675150  T

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Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 29060188 - 29060068
Alignment:
Q  77 ttcattgaaagtgaaagtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttgagagtgcatgataacaac 176  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  29060188 ttcattgaaagtgagtgtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttgagagtgcatgataataat 29060089  T
Q  177 gtgttctttacttaatctaac 197  Q
     ||||||||||||||| ||||    
T  29060088 atgttctttacttaatttaac 29060068  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 27855675 - 27855626
Alignment:
Q  147 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 196  Q
    |||||||||||||||| ||||||||| ||  ||||||| |||||||||||    
T  27855675 aatctagtgttgagagagcatgataagaatatgttcttcacttaatctaa 27855626  T

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Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 48834546 - 48834426
Alignment:
Q  77 ttcattgaaagtgaaagtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttgagagtgcatgataacaac 176  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||     
T  48834546 ttcattgaaagtgagtgtaaaattccaaaaccgtgggttgaagacaatggtgaaagggaaagaaaaaagtaatctagtgttcagagtgcatgataataat 48834447  T
Q  177 gtgttctttacttaatctaac 197  Q
     ||||||||||||||||||||    
T  48834446 atgttctttacttaatctaac 48834426  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 7818584 - 7818535
Alignment:
Q  147 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 196  Q
    |||||||||||||||| ||||||||| ||  ||||||| |||||||||||    
T  7818584 aatctagtgttgagagagcatgataagaatatgttcttcacttaatctaa 7818535  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 13936616 - 13936665
Alignment:
Q  147 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 196  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  13936616 aatctagtgttgagagagcatgttaagaatatgttctttacttaatctaa 13936665  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 37567450 - 37567499
Alignment:
Q  147 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 196  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  37567450 aatctagtgttgagagagcatgttaagaatatgttctttacttaatctaa 37567499  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 10883397 - 10883348
Alignment:
Q  147 aatctagtgttgagagtgcatgataacaacgtgttctttacttaatctaa 196  Q
    |||||||||||||||| ||||| ||| ||  |||||||||||||||||||    
T  10883397 aatctagtgttgagagagcatgttaagaatatgttctttacttaatctaa 10883348  T

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