View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_24 (Length: 252)
Name: NF15736_low_24
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 42802377 - 42802207
Alignment:
| Q |
18 |
gaagctgagttcttcttcttcgcctcacctctcctcttatcttctttttctttacaaataagacgaagaaggacatggagaagagtgaaatgaagtgtgt |
117 |
Q |
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| T |
42802377 |
gaagctgagttcttcttcttcgcctcacctctcctcttatcttctttttctttacaaataagacgaagaaggacatggagaagagtgaaatgaagtgtgt |
42802278 |
T |
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| Q |
118 |
cttcatttaaaagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaaata |
188 |
Q |
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| T |
42802277 |
cttcatttaaaagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaaata |
42802207 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 47740 - 47683
Alignment:
| Q |
128 |
aagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaa |
185 |
Q |
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| T |
47740 |
aagaagaataagaataagacgacatttgtttgagttgagtggcgtaaactatactcaa |
47683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 47830 - 47790
Alignment:
| Q |
86 |
aaggacatggagaagagtgaaatgaagtgtgtcttcattta |
126 |
Q |
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| T |
47830 |
aagggcatggagaagagtgaaatgaagtgtgtcttctttta |
47790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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