View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_25 (Length: 248)
Name: NF15736_low_25
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 8338316 - 8338537
Alignment:
| Q |
13 |
aatattcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaatt |
112 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
8338316 |
aatattcagataagaattcgaagtggcggccacgactacgaaggcttctcttacgtatcagacatatcttttgttataattgacctgcttcacctcaatt |
8338415 |
T |
|
| Q |
113 |
cagttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaagnnnnnnnnttctcttgc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8338416 |
cagttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaagaaaaacaattctcttgc |
8338515 |
T |
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| Q |
213 |
tttcccgtctggggtctgttct |
234 |
Q |
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|||||||||||||||||||||| |
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| T |
8338516 |
tttcccgtctggggtctgttct |
8338537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 36100442 - 36100651
Alignment:
| Q |
23 |
taagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcagttgatct |
122 |
Q |
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||||||| ||||||||||| ||||| || ||||||||||| ||| |||||| || ||| ||||||||||||| |||||||||||||||||||||| | |
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| T |
36100442 |
taagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgccttatgttataattgacttgcttcacctcaattcagttgaagt |
36100541 |
T |
|
| Q |
123 |
caatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaagnnnnnnnnttctcttgctttcccgtct |
222 |
Q |
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| T |
36100542 |
caatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattataccatttcaaagaaaaataattctcttgctttcccatct |
36100641 |
T |
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| Q |
223 |
ggggtctgtt |
232 |
Q |
| |
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|||||||||| |
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| T |
36100642 |
ggggtctgtt |
36100651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 21482426 - 21482605
Alignment:
| Q |
16 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
115 |
Q |
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|||||||| ||||| ||||||||||| ||||||| ||||| ||||| || | |||||| || ||| ||||||||||||| ||||||| |||||||||| |
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| T |
21482426 |
attcagatcagaatccgaagtggcggccacgactttgaaggtttctcatatgtatcagacgtgccttttgttataattgacttgcttcatctcaattcag |
21482525 |
T |
|
| Q |
116 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaag |
195 |
Q |
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| T |
21482526 |
ttgatgtcaatttacaagaagaaacagcatgggttgaatcaggtgcaacacttggaaagctttattataccattggaaag |
21482605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 36107694 - 36107872
Alignment:
| Q |
16 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || || || | ||||||||| ||| | ||||| ||||| || |||| |||||||||| |
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| T |
36107694 |
attcagattagaattcgaagtggcggtcacgactatgaaggtttttcatatgtatcagatgtgccttttattatacttgacatgtttcatctcaattcag |
36107793 |
T |
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| Q |
116 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaa |
194 |
Q |
| |
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||||| ||||||||||||| ||| |||||||||||||| ||||||||| | |||||||||||||||| ||||||||| |
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| T |
36107794 |
ttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataacattgcaaa |
36107872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 36090641 - 36090464
Alignment:
| Q |
16 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
115 |
Q |
| |
|
|||||||| ||||||||||||||||| || || |||||||| || || | | |||||| | ||| ||||||||||||| ||||||| ||||||||| |
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| T |
36090641 |
attcagatcagaattcgaagtggcggacatgattacgaaggtttatcaaatgtatcagacatgccttatgttataattgacttgcttcatctcaattcaa |
36090542 |
T |
|
| Q |
116 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaa |
193 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||||| ||||||| | | ||||||||||||||||| ||||||| |
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| T |
36090541 |
ttgatgtcaatttagaagaagaaactgcatgggttgaatcaggtgcaatacttggtaagatttattatacgattgcaa |
36090464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 34971951 - 34971777
Alignment:
| Q |
16 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
115 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| ||||| || || || ||||||||| ||| | || || ||||| || ||||||||||||||| |
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| T |
34971951 |
attcagataagaattcgaagtggagggcatgactatgaaggtttatcatatttatcagatgtgccttttattgtacttgacatgtttcacctcaattcag |
34971852 |
T |
|
| Q |
116 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattg |
190 |
Q |
| |
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||||| ||||||||||||| ||| ||||||||||||| ||||||||| | ||||||||||||||||| |||| |
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| T |
34971851 |
ttgatgtcaatttacaagaatcaacaacatgggttgaatcaggtgcaacacttggtaagatttattatacaattg |
34971777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 6838455 - 6838634
Alignment:
| Q |
16 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
115 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||| | || || | ||||||||| ||| ||||||| ||||| || |||| |||||||| | |
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| T |
6838455 |
attcagattagaattcgaagtggtggtcacgactatgaaggttgttcatatgtatcagatgtgccttttgttatacttgacatgtttcatctcaattctg |
6838554 |
T |
|
| Q |
116 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaag |
195 |
Q |
| |
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||||| ||||||||||||| ||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
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| T |
6838555 |
ttgatgtcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataccattgcaaag |
6838634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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