View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15736_low_27 (Length: 237)
Name: NF15736_low_27
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 45928638 - 45928428
Alignment:
| Q |
19 |
ggtgagagaggtgtaagaggatcatcttagaattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928638 |
ggtgagagaggtgtaagaggatcatcttagaattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcc |
45928539 |
T |
|
| Q |
119 |
tccatttgtattctaataaagttccatctagttgattcacattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928538 |
tccatttgtattctaataaagttccatctagttgattctcattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcattt |
45928439 |
T |
|
| Q |
219 |
gtcatattctt |
229 |
Q |
| |
|
|||||| |||| |
|
|
| T |
45928438 |
gtcataatctt |
45928428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University