View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_31 (Length: 218)
Name: NF15736_low_31
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 34230295 - 34230513
Alignment:
| Q |
1 |
accacccatgattccaactaggtcagcacccctagaaccacaaatctcttacaagtatactcaaaaatttattaataaaagagaaacaatttaaattgat |
100 |
Q |
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| T |
34230295 |
accacccatgattccaactaggtcagcacccctaaaaccacaaatctcttacaagtatactcaaaaatctattaataaaagagaaacaatttaaattgat |
34230394 |
T |
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| Q |
101 |
ttaaaatagttatataacagttttgttttgttattttaaggaagttatagaataattattattgcccttttttaacaatgagggccaaagtcc-ttttct |
199 |
Q |
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| T |
34230395 |
ttaaaacagttatataacagttttgttttgttattttaaggaagttatagaataattattattgcccttttttaacaatgaggaccaaagtccttttttt |
34230494 |
T |
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| Q |
200 |
ttaataataattttacttc |
218 |
Q |
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| T |
34230495 |
ttaataataattttacttc |
34230513 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 10181278 - 10181225
Alignment:
| Q |
33 |
tagaaccacaaatctcttacaagtatactcaaaaatttattaataaaagagaaa |
86 |
Q |
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| T |
10181278 |
tagaaccacaaatcttttacaagtatactgaaaaatttattaacaaaagagaaa |
10181225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 7816266 - 7816322
Alignment:
| Q |
30 |
ccctagaaccacaaatctcttacaagtatactcaaaaatttattaataaaagagaaa |
86 |
Q |
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| T |
7816266 |
ccctagaaccacaaatcccttacaagcatactgaaaaatttaataataaaagagaaa |
7816322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 28259550 - 28259502
Alignment:
| Q |
35 |
gaaccacaaatctcttacaagtatactcaaaaatttattaataaaagag |
83 |
Q |
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| T |
28259550 |
gaaccacaaatctcatacaaccacactcaaaaatttattaataaaagag |
28259502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 3117500 - 3117441
Alignment:
| Q |
27 |
cacccctagaaccacaaatctcttacaagtatactcaaaaatttattaataaaagagaaa |
86 |
Q |
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| T |
3117500 |
cacccctagaaccacagatcccttaccagcattctaaaaaaattattaataaaagagaaa |
3117441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 32576118 - 32576081
Alignment:
| Q |
49 |
ttacaagtatactcaaaaatttattaataaaagagaaa |
86 |
Q |
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| T |
32576118 |
ttacaagtatacacaacaatttattaataaaagagaaa |
32576081 |
T |
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