View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_4 (Length: 487)
Name: NF15736_low_4
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Complemental strand, 10810477 - 10810006
Alignment:
| Q |
12 |
atactcaccttctatctaaggactaattaatatgcaaggatcctacctatatcctctctattttttcactgtattacaataattttagtgtataaaagat |
111 |
Q |
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| T |
10810477 |
atactcaccttctatctaaggactaattaatatgcaaggatcttacctttatcctctctattttttcactgtattacaataattttagtgtataaaagat |
10810378 |
T |
|
| Q |
112 |
atataaagctcatttgatgttacattaacgtgtttatacttcaaaatcaaaaccataatactcctaaacctttacgtaatacaatgacaaaaggaaggat |
211 |
Q |
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| T |
10810377 |
atataaagctcatttgatgttacattaacgtgtttatacttcaaaatcaaaaccataatactcctaaacctttacgtaatacaatgacaaaaggaaggat |
10810278 |
T |
|
| Q |
212 |
caatttaggtgttactctaagcctttacgtaatgccttttaaagtaatatgatagcttaacgtttcaatatcaaataccattttaagatccaaacattgt |
311 |
Q |
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| T |
10810277 |
cgatttaggtgttactctaagcctttacgtaatgccttttaaagcaatatgatagcttaacgtttcaatatcaaataccattttaagatccaaacattgt |
10810178 |
T |
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| Q |
312 |
ctagagaattttgttcttgagcgcattttttca--------------taagatatgtctagagaattccaacactatctacacacttcttcagagactta |
397 |
Q |
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| T |
10810177 |
ctagagaattttgttcttgagcgcatttattcataagatgggttttgtaagatatgtctagagaattccaacactgtctacacacttcttcggagactta |
10810078 |
T |
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| Q |
398 |
ctagttttaagtgttaacgttatcacgtaaaccaaatataaaatatacatagtacagtaactggcccgttgc |
469 |
Q |
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| T |
10810077 |
ctagttttaagtgttaacgttatcacgtaaaccaaatataaaatatacatagtacagtaactggcccgttgc |
10810006 |
T |
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