View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_6 (Length: 441)
Name: NF15736_low_6
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 25 - 424
Target Start/End: Original strand, 11782896 - 11783295
Alignment:
| Q |
25 |
acattaacactagcacaacccttatgcactaggtctgttgatctacctcaagatctaacggaggaccataccgcatcctcctccaagaaaaccagaggta |
124 |
Q |
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| T |
11782896 |
acattaacactggcacaacccttatgcgataggtctgttgatctacctcaagatctaacggaggaccataccgcatcctcctccaagaaaaccagaggta |
11782995 |
T |
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| Q |
125 |
gacccaaaggtgctaagaataagcctaaacctatatccatcgttactaatgaaaataccgatgacatcctaatggaaccatttcttatcgaggtccctat |
224 |
Q |
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| T |
11782996 |
gacccaaaggcgctaagaataagcctaaacctgtatccatcgttactaatgaaaataccgatgacatcctaatggaaccatttcttatcgaggtccctat |
11783095 |
T |
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| Q |
225 |
tggaaaagatgttatggagactctcatcaacttggctcgtagtcagcaagctggaataaccgtgttgagcggttttggtcttgtttctgatgttacactt |
324 |
Q |
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| T |
11783096 |
tggaaaagatgttatggagactctcatcaacttagctcgtagtcaacaagctggaataaccgtgttgagtggttttggtcttgtttctgatgttacactt |
11783195 |
T |
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| Q |
325 |
cttgaaccgatgccttgtacccctgctttccgcgtcgaaggattgttccatatgacatccctctccggaacttacatcaatgctgacggtgttcatgttc |
424 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11783196 |
cttgaatcgatgccttgcacccctgctttccgcgtcgaaggattgttccatatgacatccctctccggaacttacatcaatgctgacggcgttcatgttc |
11783295 |
T |
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