View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15736_low_7 (Length: 416)
Name: NF15736_low_7
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 701212 - 701607
Alignment:
| Q |
20 |
tttgtaagtttgttgctaactataatagctccttttttggtatttaaaaaatgcataagctgtgttaagaaataaagtgatgttgtggtaagatggtgaa |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
701212 |
tttgtaagtctgttgctaactataatagctccttttttgttatttaaagaatgcataatttgtgttaagaaataaagtgatgttgtggtaagatggtgaa |
701311 |
T |
|
| Q |
120 |
actgtgaaatatgattccatgactatgactaagttaaactttcttatactatccagtgtgcagattaaactacttttttgcatgtaaatataaacactat |
219 |
Q |
| |
|
||||||||||||||||| |||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
701312 |
actgtgaaatatgattcgatgactatgagtgtgataaactttcatatactatccagtgtgcagattaaactacttttttgcatgtaaatataaacactat |
701411 |
T |
|
| Q |
220 |
atagtataacttttgcttttacttatgtgccggtattgttcatcgttcttctagcctctgttactttaattttcattactagaattttttatttctcatt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
701412 |
atagtataacttttgcttttacttatgtgccggtattattcatcgttcttctagcctccgttactttaattttcattactagaattatttatttctcatt |
701511 |
T |
|
| Q |
320 |
tccaggtcaagctattgtgtacagtgaacccgagaggcttgtgatgtcaagatctggtgatgaatgtgttgttgctttgacagatgagtggtatat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
701512 |
tccaggtcaagctattgtgtacagtgaacccgagaggccggtgatgtcaagatctggtgatgaatgtgttgttgctttgacagatcagtggtatat |
701607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 23258729 - 23258650
Alignment:
| Q |
333 |
attgtgtacagtgaacccgagaggcttgtgatgtcaagatctggtgatgaatgtgttgttgctttgacagatgagtggta |
412 |
Q |
| |
|
|||||||||||||| || |||| | |||||||| ||||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
23258729 |
attgtgtacagtgagccagagaagagggtgatgtctagatctggtgatgaatgtgttgtagctctgacagatcagtggta |
23258650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University