View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15736_low_8 (Length: 405)
Name: NF15736_low_8
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 1940310 - 1940044
Alignment:
| Q |
13 |
cacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcatt |
112 |
Q |
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| T |
1940310 |
cacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgttccatcttcatt |
1940211 |
T |
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| Q |
113 |
atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttcca |
212 |
Q |
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| T |
1940210 |
atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttccatatatcacacttcca |
1940111 |
T |
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| Q |
213 |
tccctattatcatatatatagtttcatg-catctcatgtgtaagttcaa-ttagaaggtcttaaatt |
277 |
Q |
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| T |
1940110 |
tccctattatcatatagtttcattcatgtcatgtcatgtgtaagttcaatttaaaaggtcttaaatt |
1940044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 1954764 - 1954465
Alignment:
| Q |
20 |
agcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcattatgaaga |
119 |
Q |
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| T |
1954764 |
agcattgtgttcttgaataaagagagcctgcaaagttgagacaccagcccaactattgcgaacgtcacctgaaattgctactccattttcattttgctta |
1954665 |
T |
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| Q |
120 |
agttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttccatccctat |
219 |
Q |
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| T |
1954664 |
agggtaccatcgtctaatatttttaacttcccatctttgaaagttctcactttgttcaaaacttcttgattgcttccatatatcacacttccatccctat |
1954565 |
T |
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| Q |
220 |
tatcatatatatagtttcatgcatctcatgtgtaagttcaattagaaggtcttaaattgagactatatatctaattaagtataattactagacaaaatta |
319 |
Q |
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| T |
1954564 |
tatca----tatagtttcatgcatgtcatgtgtaagttcaattagaaggtcttaaattgagacta----------taagtataattactagacaaaatta |
1954479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 1925983 - 1925776
Alignment:
| Q |
13 |
cacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcatt |
112 |
Q |
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|||| |||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| || |
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| T |
1925983 |
cacaaacagcattgtgttcttgaatgaaaagggcttgcaaagttgaaacaccagcccaactattgcgaacatcacctgaaattgcaactccatcttcgtt |
1925884 |
T |
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| Q |
113 |
atgaagaagttca---ccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacactt |
209 |
Q |
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| T |
1925883 |
ttgtagaagatgatttccttcctttgatatttttaacttcccatcttgggaagtcctcacttgggtcaaaatttcatcattgcttccatatatcacactt |
1925784 |
T |
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| Q |
210 |
ccatccct |
217 |
Q |
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|||||||| |
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| T |
1925783 |
ccatccct |
1925776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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