View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15736_low_9 (Length: 381)
Name: NF15736_low_9
Description: NF15736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15736_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 33455132 - 33455488
Alignment:
| Q |
10 |
actgttgctggaggtgctctgagatgtttgtgattctcatttgagaattcttaaaacatatctttctgtccttgctcaatgttcattggtccaaacacca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33455132 |
actgttgctggaggtgctctgagatgtttgtgattctcatttgagaattcttaaaacatattcttctgtacttgctcaatgttcattggtccaaacacca |
33455231 |
T |
|
| Q |
110 |
aaacctaaaactcctcaattagcacaataaaccgctttgagtccaacaaaaaccacttttaactaatcccacaaaccattttcttcccgttttagtttca |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33455232 |
aaacctgaaactcctcaattagcacaataaaccgctttgagtccaacaaaaaccacttttaactaatcccacaaaccattttcttcccgttttagtttca |
33455331 |
T |
|
| Q |
210 |
acatcccctctcctaataattttccagtaagtttcttcattcttaatttatgcatgactgatattttatttttatttctatgattatgcaataattaaat |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33455332 |
acatcccatctcctaataattttccagtaagtttcttcattcttaatttatgcatgactgatattttatttttatttctatgattatgcaataattaaat |
33455431 |
T |
|
| Q |
310 |
tcattgtattcaaccaatcgataagtaaatttcttataaatttcagctcatcatatt |
366 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33455432 |
tcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatatt |
33455488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 29 - 324
Target Start/End: Complemental strand, 36926223 - 36925917
Alignment:
| Q |
29 |
tgagatgtttgtgattctcatttgagaattct-taaaacatatctttctgtccttgctcaatgttcattggtccaaacaccaaaacctaaaactcctcaa |
127 |
Q |
| |
|
|||| |||||||||||||||||||| |||| | | |||||||| |||||||||||||||| || ||||||| |||||||||||||||| ||||| ||| | |
|
|
| T |
36926223 |
tgagctgtttgtgattctcatttgacaattttcttaaacatatttttctgtccttgctcattgctcattggcccaaacaccaaaaccttaaacttctcga |
36926124 |
T |
|
| Q |
128 |
ttagcacaataaaccgctttgagtccaacaaaaaccacttttaactaatcccacaaaccattttcttcccgttttagtttcaacatcccctctcctaata |
227 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36926123 |
tcagcacaataaaccgctttgagtccaacaaaaaccacttttaattaattccacaaaccattttcttcccgttttagtttcaacatcccctctcctaata |
36926024 |
T |
|
| Q |
228 |
attttccagtaagttt-----------cttcattcttaatttatgcatgactgatattttatttttatttctatgattatgcaataattaaattcattgt |
316 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| | |
|
|
| T |
36926023 |
atcctccagtaagtttcttccattattcttcattcttaatttatgcatgattg-tattttattttgatttctatgattattcaataattaaattcattat |
36925925 |
T |
|
| Q |
317 |
attcaacc |
324 |
Q |
| |
|
|||||||| |
|
|
| T |
36925924 |
attcaacc |
36925917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 262 - 365
Target Start/End: Original strand, 29060343 - 29060446
Alignment:
| Q |
262 |
catgactgatattttatttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgataagtaaatttcttataaatttcagctcatc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
29060343 |
catgactgatattttatttttatttctacgattatgcaataattaaattcattgtattcaaccaatcaatgagtaaatttcttataaatttcagctcatc |
29060442 |
T |
|
| Q |
362 |
atat |
365 |
Q |
| |
|
|||| |
|
|
| T |
29060443 |
atat |
29060446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 262 - 365
Target Start/End: Original strand, 48834701 - 48834804
Alignment:
| Q |
262 |
catgactgatattttatttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgataagtaaatttcttataaatttcagctcatc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
48834701 |
catgactgatattttatttttatttctacgattatgcaataattaaattcattgtattcaaccaatcaatgagtaaatttcttataaatttcagctcatc |
48834800 |
T |
|
| Q |
362 |
atat |
365 |
Q |
| |
|
|||| |
|
|
| T |
48834801 |
atat |
48834804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University