View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15737_high_12 (Length: 384)
Name: NF15737_high_12
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15737_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 325
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
| Q |
152 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgc |
250 |
Q |
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| T |
12933811 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
12933909 |
T |
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| Q |
251 |
gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
325 |
Q |
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| T |
12933910 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
12933984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
| Q |
175 |
catggagatttggaagaggagatttatatggagcaacc |
212 |
Q |
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| T |
36999937 |
catggtgacttggaagaggagatttatatggagcaacc |
36999974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 325
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
| Q |
152 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgc |
250 |
Q |
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| T |
28608794 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt |
28608696 |
T |
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| Q |
251 |
gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
325 |
Q |
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| T |
28608695 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
28608621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 14177081 - 14177153
Alignment:
| Q |
152 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga |
224 |
Q |
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| T |
14177081 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga |
14177153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
| Q |
160 |
aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca |
213 |
Q |
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| T |
20706182 |
aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca |
20706234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
| Q |
145 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
182 |
Q |
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| T |
6692086 |
gagcagttagatgtgaagactgcatttcttcatggaga |
6692123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
| Q |
145 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
182 |
Q |
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| T |
796735 |
gagcagttagatgtgaagactgcatttcttcatggaga |
796698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
| Q |
145 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
182 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||| |
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| T |
8273092 |
gagcagttagatgtgaagactgcatttcttcatggaga |
8273129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
| Q |
145 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
182 |
Q |
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| T |
19944036 |
gagcagttagatgtgaagactgcatttcttcatggaga |
19944073 |
T |
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