View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15737_high_15 (Length: 371)

Name: NF15737_high_15
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15737_high_15
NF15737_high_15
[»] chr4 (2 HSPs)
chr4 (1-351)||(16988055-16988405)
chr4 (93-188)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (1-351)||(21807549-21807899)
chr2 (40-337)||(20971202-20971497)
chr2 (97-187)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (40-335)||(26465292-26465587)
chr5 (99-295)||(23884074-23884270)
chr5 (31-182)||(23958779-23958930)
chr5 (256-292)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (9-336)||(34068262-34068589)
chr6 (78-203)||(20850027-20850152)
chr6 (81-205)||(14617738-14617862)
chr6 (133-211)||(28561533-28561611)
chr6 (31-272)||(12302377-12302618)
[»] chr7 (5 HSPs)
chr7 (97-197)||(3004921-3005021)
chr7 (106-215)||(8853841-8853950)
chr7 (139-188)||(18477565-18477614)
chr7 (141-205)||(19666209-19666273)
chr7 (103-197)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (97-197)||(37737401-37737501)
chr1 (91-194)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (52-205)||(8273-8426)
[»] chr8 (2 HSPs)
chr8 (103-275)||(18551164-18551336)
chr8 (94-152)||(2998101-2998159)
[»] chr3 (2 HSPs)
chr3 (139-248)||(44667108-44667217)
chr3 (46-269)||(18963220-18963443)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 16988405 - 16988055
Alignment:
Q  1 taaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagac 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16988405 taaggagaactagaatcagtgtgtaatttgcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcctgtatcagttaaaagatcaagac 16988306  T
Q  101 aatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaaga 200  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988305 aatactttctttgacaaagagagattccttgtgaggaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaaga 16988206  T
Q  201 atgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtc 300  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988205 atgcataatggctttaatatcttgaaattcagagatagaatttccagctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtc 16988106  T
Q  301 ttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988105 ttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 16988055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 35088897 - 35088802
Alignment:
Q  93 atcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 188  Q
    |||||| ||||||||||||||||| ||||| || |||  |   |||||||||||||| | |||||| |||||||| |  || ||||||||||||||    
T  35088897 atcaaggcaatactttctttgacagagagaaatgcctgctttggaatgagcaacctcaataccaaggaagtatttgagttgaccaagatccttgat 35088802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 21807549 - 21807899
Alignment:
Q  1 taaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagac 100  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  21807549 taaggagaactagaatcagtgtgtaatttgcaggaagggtcagatggcgtagaaataggtttggaagctaaaaatcatgtattagttaaaagatcaagac 21807648  T
Q  101 aatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaaga 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807649 aatactttctttgacaaagagagattccttgtgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaaga 21807748  T
Q  201 atgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21807749 atgcagaatggctttaatatcttggaattcagagatagaatttccagctaggatcacatcatcaacatacacaagtaaaattgtgaatgaagaagcagtc 21807848  T
Q  301 ttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807849 ttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 21807899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 337
Target Start/End: Original strand, 20971202 - 20971497
Alignment:
Q  40 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 139  Q
    ||||||||||||||| ||||||| ||||| | ||| | |||||||||  |  | |||||||| || |||||||| ||||||||||| |  | ||| ||||    
T  20971202 tcagatggtgtagaatcaggttttgaagcaagaaaacatgtatcagtcta--ggtcaagacattattttctttggcaaagagagatgcactgtgatgaat 20971299  T
Q  140 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 239  Q
     ||||||||||| ||||||||| ||||| || || |||||| |||| ||||| || |||||||||||| ||  ||| || || || || ||||| |  ||    
T  20971300 aagcaacctctagaccaagaaaatatttcaattgaccaagagccttaatcttgaaggaagaatgcagattgattttgatgtcctgaaactcagaaagtga 20971399  T
Q  240 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaa 337  Q
    | | ||  | |  ||||||||||||||||| ||||| ||  |||||||||||| | | |||||||| |||||||||||||||||||| ||||||||||    
T  20971400 agtaccaacaataatcacatcatcaacataaacaagcaaggctgtgaatgaagtatctgtcttcttaatgaagagagagtgatcagatgcagattgaa 20971497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 23682338 - 23682248
Alignment:
Q  97 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttga 187  Q
    |||||||||||||||||||| |  || || |||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  23682338 agacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttga 23682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 40 - 335
Target Start/End: Original strand, 26465292 - 26465587
Alignment:
Q  40 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 139  Q
    ||||||||||||||| ||||||| | ||| | ||||| | |||||||||  |||||||||||||| |||||||| ||||||||||| |||| ||| ||||    
T  26465292 tcagatggtgtagaagcaggttttgcagcaagaaatcctatatcagttaggagatcaagacaatattttctttggcaaagagagatgccttgtgaggaat 26465391  T
Q  140 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 239  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| || |  |||| |||||||||||||||||| || ||||||||||||||||  ||    
T  26465392 gagcaacttctaaaccaagaaagtatttcaattggccaagatccttaatttctaaagcagaatgcagaatggctttgatgtcttggaattcagagagtga 26465491  T
Q  240 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattg 335  Q
    | | || |  | |||||||||||||||||| ||||| ||| |||||||||||| |   |||||||| ||||| ||||| |||||||| | ||||||    
T  26465492 agtaccagtgatgatcacatcatcaacataaacaagcaaagctgtgaatgaagtatatgtcttcttaatgaaaagagaatgatcagatgtagattg 26465587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 295
Target Start/End: Original strand, 23884074 - 23884270
Alignment:
Q  99 acaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaa 198  Q
    ||||||||||||||| || || |||||||||| |  ||||||||| |||||||||||||| || |||||||| ||||||||||| ||||| || ||||||    
T  23884074 acaatactttctttggcatagtgagattccttgtttagaatgagctacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaagaa 23884173  T
Q  199 gaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaag 295  Q
       || |||||| |||| || |  || |||||| | |  || |||||||| || || | |||||| ||||||||||| |  | ||||||||||||||    
T  23884174 ttgtgaagaatgtctttgatgttctgaaattcataaagtgagtttcctgcaagaatgatatcatccacatacacaagaagtattgtgaatgaagaag 23884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 23958930 - 23958779
Alignment:
Q  31 catgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgaca-aagagagattcct 129  Q
    ||||| || ||| |||||||||||| ||||||||| || |  || | ||| ||||| | ||||||||| ||||| ||||||||||| |||| | || |||    
T  23958930 catgatggatcaaatggtgtagaaagaggtttggatgcaaggaaacatgtgtcagtcagaagatcaaggcaatattttctttgacataagaaa-atccct 23958832  T
Q  130 tttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatc 182  Q
    | |||||| |||||||||||||||||||| |||||||| || |||||||||||    
T  23958831 tgtgaagagtgagcaacctctaaaccaaggaagtatttcaattggccaagatc 23958779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 23958705 - 23958669
Alignment:
Q  256 acatcatcaacatacacaagtaaaactgtgaatgaag 292  Q
    |||||||||||||| || |||||||||||||||||||    
T  23958705 acatcatcaacataaaccagtaaaactgtgaatgaag 23958669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 336
Target Start/End: Complemental strand, 34068589 - 34068262
Alignment:
Q  9 actagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatacttt 108  Q
    |||||||||| | ||||| || || |||||||||||||| || |||||||||||| |||| | ||  |  ||||||||||  | |||||| ||||| |||    
T  34068589 actagaatcattatgtaacttgcaagaagggtcagatggagtggaaacaggtttgcaagccagaagaccagtatcagttagcaaatcaaggcaatatttt 34068490  T
Q  109 ctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaa 208  Q
    || ||||| ||||| || ||||  |||||||||||||||||||| ||||| |||||||| || || ||||| |||||||| |||||||| ||||||| ||    
T  34068489 ctctgacatagagaaatgccttcagaagaatgagcaacctctaagccaaggaagtatttcaattgaccaaggtccttgattttaaaagaggaatgcaaaa 34068390  T
Q  209 tggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgat 308  Q
    ||| ||| ||    || | |||||| | ||| |  || || |  ||||||||||| ||||| || ||||| || || ||||||| ||  ||||||||| |    
T  34068389 tggatttgatggagtgaagttcagaaagagagtcaccagcaataatcacatcatccacatagactagtaacacagtaaatgaagtagtggtcttcttggt 34068290  T
Q  309 gaagagagagtgatcagaagcagattga 336  Q
    ||| | ||| |||||||||| |||||||    
T  34068289 gaacaaagaatgatcagaagtagattga 34068262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 20850027 - 20850152
Alignment:
Q  78 tgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggcca 177  Q
    ||||||||| | ||||||||||||||||||||| || || | | | ||||||| |||||| ||||||| || ||||||||||||||| || ||||| |||    
T  20850027 tgtatcagtgagaagatcaagacaatactttctctggcacaaaaatattccttgtgaagagtgagcaaactttaaaccaagaaagtacttcaactgacca 20850126  T
Q  178 agatccttgatcttaaaagaagaatg 203  Q
    ||||| || || || || ||||||||    
T  20850127 agatctttaattttgaatgaagaatg 20850152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 14617862 - 14617738
Alignment:
Q  81 atcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaaga 180  Q
    |||||| | |||||| |||||||||||||| | | |||| || || ||||  ||||| |||||||||||||||||||| || ||||| || ||||| |      
T  14617862 atcagtgagaagatccagacaatactttctctaaaaaagtgaaatgccttgagaagagtgagcaacctctaaaccaaggaattatttcaattggcccaag 14617763  T
Q  181 tccttgatcttaaaagaagaatgca 205  Q
    ||||| ||||| ||||| |||||||    
T  14617762 tccttaatcttgaaagaggaatgca 14617738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 28561611 - 28561533
Alignment:
Q  133 gaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatgg 211  Q
    |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||    
T  28561611 gaagaatgtgccacctctaatccaagaaaatatttcaactgaccaagatctttaatcttgaaggaagaatgcaggatgg 28561533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 272
Target Start/End: Complemental strand, 12302618 - 12302377
Alignment:
Q  31 catgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattcctt 130  Q
    |||||||| ||||| || |||||||||||||||||||  | |   | |  |||||| | ||||||||  |||||||| |||||| | |  ||||||||||    
T  12302618 catgaaggttcagaaggagtagaaacaggtttggaagtcagatgacctagatcagtgagaagatcaatgcaatacttcctttgatacaaggagattcctt 12302519  T
Q  131 ttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattc 230  Q
    | || ||||| | ||| || |||  | | ||||| |||||||  |||||||| || ||||| || |||||||| || |||||||| |||| ||| |||||    
T  12302518 tagatgaatgtgaaacttcaaaatgatggaagtaatttaactaaccaagatctttaatcttgaaggaagaatgtaggatggctttcatatgttgaaattc 12302419  T
Q  231 agagatagaatttcctgctaggatcacatcatcaacatacac 272  Q
    ||| || ||||  || || | ||||| ||||| |||||||||    
T  12302418 agacatggaatcaccagcaatgatcatatcattaacatacac 12302377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 3005021 - 3004921
Alignment:
Q  97 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 196  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  3005021 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 3004922  T
Q  197 a 197  Q
    |    
T  3004921 a 3004921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 8853950 - 8853841
Alignment:
Q  106 tttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 205  Q
    ||||| ||||||||||| |||||||  ||||||||||||| |||||| ||||| || || || || || |||||||||||||| ||||| || || ||||    
T  8853950 tttctctgacaaagagatattccttgagaagaatgagcaatctctaatccaaggaaatacttcaattgaccaagatccttgattttaaaggaggagtgca 8853851  T
Q  206 gaatggcttt 215  Q
    ||||||||||    
T  8853850 gaatggcttt 8853841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 18477614 - 18477565
Alignment:
Q  139 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 188  Q
    |||||||| ||||||||||||||  |||| ||||||||||||||||||||    
T  18477614 tgagcaacttctaaaccaagaaaaaatttcaactggccaagatccttgat 18477565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 19666273 - 19666209
Alignment:
Q  141 agcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 205  Q
    ||||||||||||||||||||| ||||| |||||||| |  ||||| ||||| ||||| |||||||    
T  19666273 agcaacctctaaaccaagaaaatatttcaactggcccaagtccttaatcttgaaagaggaatgca 19666209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 19813298 - 19813392
Alignment:
Q  103 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaaga 197  Q
    ||||||||||| || || || || |||| |  |||||||||||| ||||||||||| ||||||||||| |||| | |||| ||||| || |||||    
T  19813298 tactttctttggcatagggaaatcccttgttcagaatgagcaacttctaaaccaaggaagtattttaattggcaatgatctttgattttgaaaga 19813392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 37737401 - 37737501
Alignment:
Q  97 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 196  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  37737401 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 37737500  T
Q  197 a 197  Q
    |    
T  37737501 a 37737501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 13427891 - 13427994
Alignment:
Q  91 agatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatct 190  Q
    |||||||||||||| |||||||| || | |  |||||| ||   ||||| ||| |||||||  |||||||| ||||||| ||||||||||||||||||||    
T  13427891 agatcaagacaatattttctttggcatatactgattccattcttagaataagccacctctatgccaagaaaatattttagctggccaagatccttgatct 13427990  T
Q  191 taaa 194  Q
    ||||    
T  13427991 taaa 13427994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 205
Target Start/End: Complemental strand, 8426 - 8273
Alignment:
Q  52 gaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctcta 151  Q
    ||||| |||||||||||||||   | || |||||| |  ||||| |||||||| ||| | ||||||| ||| || ||||  ||||| |||||||||||||    
T  8426 gaaactggtttggaagctaaatgacctgaatcagtgaggagatccagacaatattttttctgacaaacagatatgccttgagaagagtgagcaacctcta 8327  T
Q  152 aaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 205  Q
    |||||||||| ||||| || ||||| |  ||||| ||||| ||||| |||||||    
T  8326 aaccaagaaaatatttcaattggcccaagtccttaatcttgaaagaggaatgca 8273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 275
Target Start/End: Original strand, 18551164 - 18551336
Alignment:
Q  103 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaat 202  Q
    ||||||||||| || | ||| || |||| |  ||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |||||   ||    
T  18551164 tactttctttggcataaagatatcccttgttcagaatgagctacttctaaaccaaggaaatatttcaactggccaagatctttgattttgaaagagttat 18551263  T
Q  203 gcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaag 275  Q
    | ||||||| ||| || | ||  |||||||| |  ||||||||||||||||| | |||||| ||||| |||||    
T  18551264 gaagaatggttttgatgttttcaaattcagaaagtgaatttcctgctaggatgatatcatctacatagacaag 18551336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 2998159 - 2998101
Alignment:
Q  94 tcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaa 152  Q
    ||||||||||||||||||||| ||| |||||| |||| |   |||||||||||||||||    
T  2998159 tcaagacaatactttctttgagaaatagagatcccttctttggaatgagcaacctctaa 2998101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 44667108 - 44667217
Alignment:
Q  139 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatag 238  Q
    ||||||||||| | ||||||||| || || ||||| || | ||| |||||||| || |||| ||||||||||| ||| |||| |||||| ||||| | ||    
T  44667108 tgagcaacctcaagaccaagaaaatagttcaactgtcccaaatctttgatcttgaatgaagcatgcagaatggatttgatatgttggaactcagaaagag 44667207  T
Q  239 aatttcctgc 248  Q
    ||||||||||    
T  44667208 aatttcctgc 44667217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 18963220 - 18963443
Alignment:
Q  46 ggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaa 145  Q
    ||||||||||||||||||||||||| |   | |  |||| | | ||||||||  ||||| || ||||| || | |||||||||||  || ||||| ||||    
T  18963220 ggtgtagaaacaggtttggaagctagatgacctaaatcaataagaagatcaatgcaatatttcctttggcacaaagagattccttgagatgaatgtgcaa 18963319  T
Q  146 cctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcc 245  Q
    | ||||||||||| || ||||| ||||| |||||||| || || || || || |||||||| ||  | || |||| ||| |||||||| ||||  || ||    
T  18963320 cttctaaaccaaggaaatatttcaactgaccaagatctttaattttgaatgacgaatgcaggatatcattgatatgttgaaattcagacatagtgttacc 18963419  T
Q  246 tgctaggatcacatcatcaacata 269  Q
     || |  |||||||||||||||||    
T  18963420 agcaattatcacatcatcaacata 18963443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University