View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15737_high_2 (Length: 556)
Name: NF15737_high_2
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15737_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 52512127 - 52512657
Alignment:
| Q |
1 |
attttcctgtaccaccacacatatcacctaaatgaaa----------agtagtattataataaggaagaagaatattattatta-----------aaaaa |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| | ||| |
|
|
| T |
52512127 |
attttcctgtaccaccacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaa |
52512226 |
T |
|
| Q |
80 |
gaatgaggagaaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttg |
179 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512227 |
gaatgaagagaaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttg |
52512326 |
T |
|
| Q |
180 |
gttgcattaattaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaannnnnnnnnnnnnnnnnnnnnnnnnctatatgaatgcaa |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52512327 |
gttgcattaattaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaacttcttcttcttcttcttcttcttcctatatgaatgcaa |
52512426 |
T |
|
| Q |
280 |
ttaattaagttaatgatgag----tgagtgagtaattgaaattgaattgaaactcgtatataaacatacatacataccttggaggaagaatgatatcctt |
375 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512427 |
ttaattaagttaatgatgagtgagtgagtgagtaattgaaattgaattgaaactcatatataaacatacatacataccttggaggaagaatgatatcctt |
52512526 |
T |
|
| Q |
376 |
gattttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaa |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512527 |
gattttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaa |
52512626 |
T |
|
| Q |
476 |
attgcaatccattgagatatgaagaatagag |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52512627 |
attgcaatccattgagatatgaagaatagag |
52512657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University