View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15737_high_31 (Length: 307)
Name: NF15737_high_31
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15737_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35475801 - 35475571
Alignment:
| Q |
1 |
caaccattttgagttcaaatatgggaacgtgagggggacaaataaagcagcagtataataaatataagaatatatcatgaaaggaattttttacattttt |
100 |
Q |
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| T |
35475801 |
caaccattgtgagttcaaatatgggaacgtgagggggacaaataaagcagtagtataataaatataagaatatatcatgaaaggaattttttacattttt |
35475702 |
T |
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| Q |
101 |
aggatgaggataataagtttc----nnnnnnnnnnnnngagagggataataagttggtatcgtattnnnnnnnnntgtattcagtattactattgccata |
196 |
Q |
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| T |
35475701 |
aggatgaggataataagtttcttttgttttttttttttgagagggataataagttggtatcgtattaaaaaaaaatgtattcagtattactattgccata |
35475602 |
T |
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| Q |
197 |
aatatagagtaagtaagaagattattgactt |
227 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35475601 |
aatatagagtaagtaagaagattattgactt |
35475571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 35475084 - 35475046
Alignment:
| Q |
214 |
aagattattgacttgagagtggtatataatctaatctaa |
252 |
Q |
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| T |
35475084 |
aagattattgacttgagagtggtatataatctaatctaa |
35475046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 35475029 - 35474993
Alignment:
| Q |
271 |
cattttgcatacaccacaaattcatctaacatgtgca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35475029 |
cattttgcatacaccacaaattcatctaacatgtgca |
35474993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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