View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15737_high_7 (Length: 462)
Name: NF15737_high_7
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15737_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 94 - 368
Target Start/End: Complemental strand, 4986091 - 4985817
Alignment:
| Q |
94 |
catcatgcaaaaatatggtaagacacactaaccttaaaaatgagactgttannnnnnnaaaccttttttatgacataacagttgccataatctcaaggaa |
193 |
Q |
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| T |
4986091 |
catcatgcaaaaatatggtaagacacactaaccttaaaaatgagactgttatttttttaaaccttttttatgacataacagttgccataatctcaaggaa |
4985992 |
T |
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| Q |
194 |
tctcacctacaaagttcattgtcaacagttaggtttgaaatttgattgagactttggagctcaaaattttcaactgtcggcaagtagtgtcctatattta |
293 |
Q |
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| T |
4985991 |
tctcaccgacaaagttcattgtcaacagttaggtttgaaatttgattgagactttggagctcaaaattttctactttcggcaagtagtgtcctatattta |
4985892 |
T |
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| Q |
294 |
cattaaaattacaagagtttgtgccgcaatttaaacaaattttgatacacaatcaagaataaaatatcttctcag |
368 |
Q |
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| T |
4985891 |
cattaaaattacaagagtttgtgccgcaatttaaacaaattttgatatacaatcaagaataaaatatcttctcag |
4985817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 4986154 - 4986115
Alignment:
| Q |
22 |
tgacacaagaatttagagctaataagagcaacaaataaca |
61 |
Q |
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| T |
4986154 |
tgacacaagaatttagagctaataagagcaacaaataaca |
4986115 |
T |
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