View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15737_high_8 (Length: 442)
Name: NF15737_high_8
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15737_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 31 - 426
Target Start/End: Original strand, 22776592 - 22776987
Alignment:
| Q |
31 |
gatcatattttgaaagaactctaaccacattatcaaccataaatacagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaa |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22776592 |
gatcatattttgaaagaactctaaccacattatcaaccataaacacagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaa |
22776691 |
T |
|
| Q |
131 |
tgtctctgtcacaatccttgaaatccttaaagcagatctctgtccctgacgatttgtatacttaaatctactagtgtcccccgaaatttgaatatctggt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22776692 |
tgtctctgtcacaatccttgaaatccttaaagcagatctctgtccctgacgattcgtatacttaaatctactagtgtcccccgaaatttgaatatctggt |
22776791 |
T |
|
| Q |
231 |
aaatcttcatcatcacgtgtcttcactctttgatccatccacaccacccctcttgtttcattaggtttccaccataccttaatgtattcctttcttatgt |
330 |
Q |
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| T |
22776792 |
aaatcttcatcatcacgtgtcttcactctttgatccatccacaccacccctcttgtttcattatgtttccaccataccttaatgtattcctttcttatgt |
22776891 |
T |
|
| Q |
331 |
tccacaaatttgatgaagccgctatcccaaaaacaatgtgtttgatttctgtgtcttgtctttgagataaatcatcaatagacaattcttcttcat |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22776892 |
tccacaaatttgatgaagccgctatcccaaaaacaatgtgtttgatctctgtgtcttgtctttgagataaatcatcaatagacaattcttcttcat |
22776987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 33 - 396
Target Start/End: Original strand, 40945208 - 40945571
Alignment:
| Q |
33 |
tcatattttgaaagaactctaaccacattatcaaccataaatacagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaatg |
132 |
Q |
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||||| |||||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||| |||||||| ||||| | ||| ||||| ||||||| |
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| T |
40945208 |
tcatactttgaaagaattctaacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatg |
40945307 |
T |
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| Q |
133 |
tctctgtcacaatccttgaaatccttaaagcagatctctgtccctgacgatttgtatacttaaatctactagtgtcccccgaaatttgaatatctggtaa |
232 |
Q |
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|||||||||||| |||||| ||||| || || || || |||||||| |||||||||||| |||| || |||||| | || ||| ||||||| ||||| |
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| T |
40945308 |
tctctgtcacaacccttgatatcctcaatgctgacctttgtccctgtcgatttgtataccgaaatttagaagtgtcatctgagattcgaatatcaggtaa |
40945407 |
T |
|
| Q |
233 |
atcttcatcatcacgtgtcttcactctttgatccatccacaccacccctcttgtttcattaggtttccaccataccttaatgtattcctttcttatgttc |
332 |
Q |
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|||| | |||| ||||||||||||| | ||| || || |||||||||| || ||| ||||||||| || |||||||| |||||| | ||| |
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| T |
40945408 |
cccttcgttcctttgtgtactcactctttgatctaaccaaacaacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtattc |
40945507 |
T |
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| Q |
333 |
cacaaatttgatgaagccgctatcccaaaaacaatgtgtttgatttctgtgtcttgtctttgag |
396 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||||||| | || || ||||||||||||| |
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| T |
40945508 |
cataaatttgatgaagcagctatcccaaaaacaatgtgtttcagctcagtatcttgtctttgag |
40945571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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